Debian Bug report logs - #860682
bcftools: FTBFS on i386: Test failures

Package: src:bcftools; Maintainer for src:bcftools is Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>;

Affects: src:python-pysam

Reported by: Lucas Nussbaum <lucas@debian.org>

Date: Wed, 19 Apr 2017 07:52:20 UTC

Severity: important

Tags: bullseye, ftbfs, sid, stretch

Merged with 819617, 860704

Found in versions bcftools/1.2-1, bcftools/1.3.1-1

Fixed in version bcftools/1.10.2-2

Done: Andreas Tille <andreas@an3as.eu>

Bug is archived. No further changes may be made.

Forwarded to https://github.com/samtools/bcftools/issues/389

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Report forwarded to debian-bugs-dist@lists.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>:
Bug#860682; Package src:bcftools. (Wed, 19 Apr 2017 07:52:24 GMT) (full text, mbox, link).

Acknowledgement sent to Lucas Nussbaum <lucas@debian.org>:
New Bug report received and forwarded. Copy sent to Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>. (Wed, 19 Apr 2017 07:52:24 GMT) (full text, mbox, link).

Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

Source: bcftools
Version: 1.3.1-1
Severity: serious
Tags: stretch sid
User: debian-qa@lists.debian.org
Usertags: qa-ftbfs-20170418-i386 qa-ftbfs
Justification: FTBFS in stretch on i386

Hi,

During a rebuild of all packages in stretch (in a stretch chroot, not a
sid chroot), your package failed to build on i386.

Relevant part (hopefully):
> 
> test_vcf_consensus:
> 	/<<PKGBUILDDIR>>/bcftools consensus /tmp/n7XWnhNTFy/consensus2.vcf.gz -f /<<PKGBUILDDIR>>/test/consensus2.fa -H 2   2>/dev/null
> .. ok
> 
> test_vcf_consensus:
> 	/<<PKGBUILDDIR>>/bcftools consensus /tmp/n7XWnhNTFy/empty.vcf.gz -f /<<PKGBUILDDIR>>/test/consensus.fa    2>/dev/null
> .. ok
> 
> 
> Number of tests:
>     total   .. 410
>     passed  .. 336
>     failed  .. 74
> 
> Makefile:102: recipe for target 'test' failed

The full build log is available from:
   http://aws-logs.debian.net/2017/04/18/bcftools_1.3.1-1_testing-i386.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.

Information forwarded to debian-bugs-dist@lists.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>:
Bug#860682; Package src:bcftools. (Wed, 19 Apr 2017 09:57:02 GMT) (full text, mbox, link).

Acknowledgement sent to Andreas Tille <tille@debian.org>:
Extra info received and forwarded to list. Copy sent to Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>. (Wed, 19 Apr 2017 09:57:02 GMT) (full text, mbox, link).

Message #10 received at 860682@bugs.debian.org (full text, mbox, reply):

Hi,

as per bug #819617 the fact that bcftools does not build on i386 is
known.  In how far is it a serious bug if a package that has never
build on an architecture does not build?

I have the impression that there are some false positives in your
archive rebuild script.

Kind regards

       Andreas.

On Wed, Apr 19, 2017 at 09:29:10AM +0200, Lucas Nussbaum wrote:
> Source: bcftools
> Version: 1.3.1-1
> Severity: serious
> Tags: stretch sid
> User: debian-qa@lists.debian.org
> Usertags: qa-ftbfs-20170418-i386 qa-ftbfs
> Justification: FTBFS in stretch on i386
> 
> Hi,
> 
> During a rebuild of all packages in stretch (in a stretch chroot, not a
> sid chroot), your package failed to build on i386.
> 
> Relevant part (hopefully):
> > 
> > test_vcf_consensus:
> > 	/<<PKGBUILDDIR>>/bcftools consensus /tmp/n7XWnhNTFy/consensus2.vcf.gz -f /<<PKGBUILDDIR>>/test/consensus2.fa -H 2   2>/dev/null
> > .. ok
> > 
> > test_vcf_consensus:
> > 	/<<PKGBUILDDIR>>/bcftools consensus /tmp/n7XWnhNTFy/empty.vcf.gz -f /<<PKGBUILDDIR>>/test/consensus.fa    2>/dev/null
> > .. ok
> > 
> > 
> > Number of tests:
> >     total   .. 410
> >     passed  .. 336
> >     failed  .. 74
> > 
> > Makefile:102: recipe for target 'test' failed
> 
> The full build log is available from:
>    http://aws-logs.debian.net/2017/04/18/bcftools_1.3.1-1_testing-i386.log
> 
> A list of current common problems and possible solutions is available at
> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
> 
> About the archive rebuild: The rebuild was done on EC2 VM instances from
> Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
> failed build was retried once to eliminate random failures.
> 
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging@lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
> 

-- 
http://fam-tille.de

Severity set to 'wishlist' from 'serious' Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Wed, 19 Apr 2017 10:21:14 GMT) (full text, mbox, link).

Added tag(s) buster. Request was from ivodd@debian.org to control@bugs.debian.org. (Sun, 18 Jun 2017 09:58:28 GMT) (full text, mbox, link).

Set Bug forwarded-to-address to 'https://github.com/samtools/bcftools/issues/389'. Request was from Adrian Bunk <bunk@debian.org> to control@bugs.debian.org. (Tue, 18 Jul 2017 11:30:08 GMT) (full text, mbox, link).

Severity set to 'important' from 'wishlist' Request was from Adrian Bunk <bunk@debian.org> to control@bugs.debian.org. (Tue, 18 Jul 2017 11:30:08 GMT) (full text, mbox, link).

Marked as found in versions bcftools/1.2-1. Request was from Adrian Bunk <bunk@debian.org> to control@bugs.debian.org. (Tue, 18 Jul 2017 11:30:09 GMT) (full text, mbox, link).

Merged 819617 860682 860704 Request was from Adrian Bunk <bunk@debian.org> to control@bugs.debian.org. (Tue, 18 Jul 2017 11:30:10 GMT) (full text, mbox, link).

Added indication that 860682 affects src:python-pysam Request was from Adrian Bunk <bunk@debian.org> to control@bugs.debian.org. (Tue, 18 Jul 2017 11:30:12 GMT) (full text, mbox, link).

Added tag(s) ftbfs. Request was from Adrian Bunk <bunk@debian.org> to control@bugs.debian.org. (Fri, 22 Jun 2018 16:13:48 GMT) (full text, mbox, link).

Added tag(s) bullseye. Request was from ivodd@debian.org to control@bugs.debian.org. (Mon, 08 Jul 2019 08:30:35 GMT) (full text, mbox, link).

Marked as fixed in versions bcftools/1.10.2-2. Request was from Michael Crusoe <michael.crusoe@gmail.com> to control@bugs.debian.org. (Thu, 02 Jan 2020 13:39:03 GMT) (full text, mbox, link).

Message #31 received at 819617-done@bugs.debian.org (full text, mbox, reply):

Hi,

I'm hereby closing this bug report since it is solved in recent versions.

Kind regards

     Andreas.


-- 
http://fam-tille.de

Removed tag(s) buster. Request was from Andreas Beckmann <anbe@debian.org> to control@bugs.debian.org. (Wed, 12 Jan 2022 14:12:06 GMT) (full text, mbox, link).

Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Thu, 10 Feb 2022 07:24:38 GMT) (full text, mbox, link).

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Debian Bug report logs - #860682 bcftools: FTBFS on i386: Test failures

Debian Bug report logs - #860682
bcftools: FTBFS on i386: Test failures