Debian Bug report logs - #995258
python-pairix: please make the build reproducible

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: "Chris Lamb" <lamby@debian.org>

To: submit@bugs.debian.org

Subject: python-pairix: please make the build reproducible

Date: Tue, 28 Sep 2021 16:54:07 +0100

[Message part 1 (text/plain, inline)]

Source: python-pairix
Version: 0.3.7-3
Severity: wishlist
Tags: patch
User: reproducible-builds@lists.alioth.debian.org
Usertags: filesystem
X-Debbugs-Cc: reproducible-bugs@lists.alioth.debian.org

Hi,

Whilst working on the Reproducible Builds effort [0] we noticed that
python-pairix could not be built reproducibly.

This is because whilst the generation of samples.tar.xz correctly uses
--mode, --owner, --group as well as --numeric-owner, it misses
--sort=name. It, therefore, inherits the underlying and
nondeterministic filesystem ordering.

A patch is attached that adds precisely this.

 [0] https://reproducible-builds.org/


Regards,

--
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org / chris-lamb.co.uk
       `-

[python-pairix.diff.txt (text/plain, attachment)]

Message #8 received at 995258-submitter@bugs.debian.org (full text, mbox, reply):

From: Nilesh Patra <noreply@salsa.debian.org>

To: 995258-submitter@bugs.debian.org

Subject: Bug#995258 marked as pending in python-pairix

Date: Sat, 04 Dec 2021 20:01:00 +0000

Control: tag -1 pending

Hello,

Bug #995258 in python-pairix reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/python-pairix/-/commit/c8a0f25ed3c356e13d4dc50a87992b036978b95c

------------------------------------------------------------------------
d/rules: sort with names while tar-ing so as to make build reproducible (Closes: #995258)
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/995258

Message #15 received at 995258-close@bugs.debian.org (full text, mbox, reply):

From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>

To: 995258-close@bugs.debian.org

Subject: Bug#995258: fixed in python-pairix 0.3.7-5

Date: Sat, 04 Dec 2021 20:37:26 +0000

Source: python-pairix
Source-Version: 0.3.7-5
Done: Nilesh Patra <nilesh@debian.org>

We believe that the bug you reported is fixed in the latest version of
python-pairix, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 995258@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nilesh Patra <nilesh@debian.org> (supplier of updated python-pairix package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 04 Dec 2021 23:48:55 +0530
Source: python-pairix
Architecture: source
Version: 0.3.7-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Closes: 995258
Changes:
 python-pairix (0.3.7-5) unstable; urgency=medium
 .
   * Team Upload.
   * d/rules: sort with names while tar-ing so
     as to make build reproducible (Closes: #995258)
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 26c8d99ffe4ec01326b4a76aea192c0b 4676 science optional python-pairix_0.3.7-5.debian.tar.xz
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