Debian Bug report logs - #953117
infernal: please make the build reproducible

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: "Chris Lamb" <lamby@debian.org>

To: submit@bugs.debian.org

Subject: infernal: please make the build reproducible

Date: Wed, 04 Mar 2020 10:31:54 -0800

[Message part 1 (text/plain, inline)]

Source: infernal
Version: 1.1.3-4
Severity: wishlist
Tags: patch
User: reproducible-builds@lists.alioth.debian.org
Usertags: timestamps
X-Debbugs-Cc: reproducible-bugs@lists.alioth.debian.org

Hi,

Whilst working on the Reproducible Builds effort [0] we noticed that
infernal could not be built reproducibly:

│ │ │ ├── ./usr/share/doc/infernal/examples/testsuite/i49.tbl
│ │ │ │ @@ -5,10 +5,10 @@
│ │ │ │  #
│ │ │ │  # Program:         cmsearch
│ │ │ │  # Version:         1.1.3 (Nov 2019)
│ │ │ │  # Pipeline mode:   SEARCH
│ │ │ │  # Query file:      ./../testsuite/bug-i49.cm
│ │ │ │  # Target file:     ./../testsuite/bug-i49.fa
│ │ │ │  # Option settings: ../src/cmsearch --tblout i49.tbl --toponly --cpu 0 ./../testsuite/bug-i49.cm ./../testsuite/bug-i49.fa 
│ │ │ │ -# Current dir:     /build/1st/infernal-1.1.3/testsuite
│ │ │ │ -# Date:            Sun Mar  1 19:36:34 2020
│ │ │ │ +# Current dir:     /build/2/infernal-1.1.3/2nd/testsuite
│ │ │ │ +# Date:            Mon Apr  5 04:14:10 2021
│ │ │ │  # [ok]

Patch attached that excludes this nondetermistic file from the binary
package.

 [0] https://reproducible-builds.org/


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org / chris-lamb.co.uk
       `-

[infernal.diff.txt (text/plain, attachment)]

Message #10 received at 953117@bugs.debian.org (full text, mbox, reply):

From: "Chris Lamb" <lamby@debian.org>

To: 953117@bugs.debian.org

Subject: Re: Bug#953117: Acknowledgement (infernal: please make the build reproducible)

Date: Wed, 04 Mar 2020 10:39:47 -0800

> Thank you for filing a new Bug report with Debian.

[…]

Ah, this might be actually #946315 that needs reopening..



Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org 🍥 chris-lamb.co.uk
       `-

Message #15 received at 953117-close@bugs.debian.org (full text, mbox, reply):

From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>

To: 953117-close@bugs.debian.org

Subject: Bug#953117: fixed in infernal 1.1.3-5

Date: Wed, 04 Mar 2020 20:53:05 +0000

Source: infernal
Source-Version: 1.1.3-5
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
infernal, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 953117@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated infernal package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 04 Mar 2020 19:51:06 +0100
Source: infernal
Architecture: source
Version: 1.1.3-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 953117
Changes:
 infernal (1.1.3-5) unstable; urgency=medium
 .
   * Make build reproducible
     Closes: #953117
   * Standards-Version: 4.5.0 (routine-update)
   * Add salsa-ci file (routine-update)
Checksums-Sha1:
 d3467e3acce66d7a3ec00f2c5c144d72caf2d75c 2149 infernal_1.1.3-5.dsc
 f8ed0c20edd05cd27d4b9df5fa18556bdd125b9b 10976 infernal_1.1.3-5.debian.tar.xz
 08448e169da4f12bf36d63c1bf4c6a09e9782eb8 6652 infernal_1.1.3-5_amd64.buildinfo
Checksums-Sha256:
 257e928fd4298e2824865d0a9abb3c87ff5642a3f64c34306288cf0d1f580857 2149 infernal_1.1.3-5.dsc
 9d267f5edcca2bbf1316815e8802e5ec0a0132e8591bf94ce79f4bf2f45db7ac 10976 infernal_1.1.3-5.debian.tar.xz
 484d7daa1821694c91725aceedacc6ad73ebd7df7485ac92e3b866931f2fef19 6652 infernal_1.1.3-5_amd64.buildinfo
Files:
 8beef62a5a56591bdb4cd83cb95db731 2149 science optional infernal_1.1.3-5.dsc
 af604a27296dc50dbd65a0466ac9ad44 10976 science optional infernal_1.1.3-5.debian.tar.xz
 bb6e6f00f3378c1cfd662ee3302fe106 6652 science optional infernal_1.1.3-5_amd64.buildinfo

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