Debian Bug report logs - #946315
infernal: please make the build reproducible

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: "Chris Lamb" <lamby@debian.org>

To: submit@bugs.debian.org

Subject: infernal: please make the build reproducible

Date: Fri, 06 Dec 2019 22:57:06 -0000

[Message part 1 (text/plain, inline)]

Source: infernal
Version: 1.1.3-2
Severity: wishlist
Tags: patch
User: reproducible-builds@lists.alioth.debian.org
Usertags: timestamps
X-Debbugs-Cc: reproducible-bugs@lists.alioth.debian.org

Hi,

Whilst working on the Reproducible Builds effort [0] we noticed that
infernal could not be built reproducibly.

This is because it embeds the current build timestamp and the absolute
build directory from which it was built in a generated file that is
shipped with the package.

Sample patch attached.

 [0] https://reproducible-builds.org/


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org / chris-lamb.co.uk
       `-

[infernal.diff.txt (text/plain, attachment)]

Message #10 received at 946315-close@bugs.debian.org (full text, mbox, reply):

From: Andreas Tille <tille@debian.org>

To: 946315-close@bugs.debian.org

Subject: Bug#946315: fixed in infernal 1.1.3-3

Date: Sat, 07 Dec 2019 08:53:40 +0000

Source: infernal
Source-Version: 1.1.3-3

We believe that the bug you reported is fixed in the latest version of
infernal, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 946315@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated infernal package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 07 Dec 2019 08:56:34 +0100
Source: infernal
Binary: infernal infernal-doc
Architecture: source
Version: 1.1.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 infernal   - inference of RNA secondary structural alignments
 infernal-doc - inference of RNA secondary structural alignments – documentation
Closes: 946314 946315
Changes:
 infernal (1.1.3-3) unstable; urgency=medium
 .
   [ Chris Lamb ]
   * Make the build reproducible
     Closes: #946315
   * Enable "nocheck" build profile
     Closes: #946314
 .
   [ Andreas Tille ]
   * Remove patches autoreconf.patch, format_security.patch that are
     missing from debian/patches/series.
   * debian/copyright: use spaces rather than tabs to start continuation
     lines.
   * Set upstream metadata fields: Name (from ./configure).
Checksums-Sha1:
 b49167d3c80c497119a2564617b1fef04fdc1025 2149 infernal_1.1.3-3.dsc
 8b1591a1f38c74cb5ed1f2e1f2344cfd9c012bae 10796 infernal_1.1.3-3.debian.tar.xz
Checksums-Sha256:
 364b0360b40907be6743e7f5cec89efa6efde9969733989fe516014084976ed7 2149 infernal_1.1.3-3.dsc
 d3d96ed634ac88abc9de0e10dceefd1f3422e6204e97095a5a8a60ed119275ce 10796 infernal_1.1.3-3.debian.tar.xz
Files:
 d01ddc9ed4174e307a581c666bb2e51d 2149 science optional infernal_1.1.3-3.dsc
 2f2b431d79add5a63b7cb49408f5c745 10796 science optional infernal_1.1.3-3.debian.tar.xz

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Message #15 received at 946315@bugs.debian.org (full text, mbox, reply):

From: "Chris Lamb" <lamby@debian.org>

To: 946315@bugs.debian.org

Subject: Re: infernal: please make the build reproducible

Date: Sat, 07 Dec 2019 14:02:11 +0000

forwarded 946315 https://github.com/EddyRivasLab/infernal/pull/19
thanks

I've forwarded this upstream here:

  https://github.com/EddyRivasLab/infernal/pull/19


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org / chris-lamb.co.uk
       `-

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