Debian Bug report logs - #891529
acedb FTBFS with flex 2.6.4-6

Toggle useless messages

Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Adrian Bunk <bunk@debian.org>

To: Debian Bug Tracking System <submit@bugs.debian.org>

Subject: acedb FTBFS with flex 2.6.4-6

Date: Mon, 26 Feb 2018 14:56:21 +0200

[Message part 1 (text/plain, inline)]

Source: acedb
Version: 4.9.39+dfsg.02-2
Severity: serious
Tags: patch

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/acedb.html

...
gcc -g -Wl,-z,relro -Wl,-z,now -o metacheck metadata.o -L. -lace -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 -lfl 
./libfree.a(filsubs.o): In function `filTmpOpenWithSuffix':
acedb_4.9.39+dfsg.02-2/bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp'
/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/libfl.so: undefined reference to `yylex'
collect2: error: ld returned 1 exit status
make[3]: *** [makefile:1271: metacheck] Error 1


Fix attached.

[libfl.patch (text/plain, attachment)]

Message #10 received at 891529-close@bugs.debian.org (full text, mbox, reply):

From: Andreas Tille <tille@debian.org>

To: 891529-close@bugs.debian.org

Subject: Bug#891529: fixed in acedb 4.9.39+dfsg.02-3

Date: Wed, 28 Feb 2018 10:34:26 +0000

Source: acedb
Source-Version: 4.9.39+dfsg.02-3

We believe that the bug you reported is fixed in the latest version of
acedb, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 891529@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated acedb package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 28 Feb 2018 11:11:58 +0100
Source: acedb
Binary: acedb-other-dotter acedb-other-belvu acedb-other
Architecture: source
Version: 4.9.39+dfsg.02-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 acedb-other - retrieval of DNA or protein sequences
 acedb-other-belvu - transitional package for belvu
 acedb-other-dotter - transitional package for dotter
Closes: 891529
Changes:
 acedb (4.9.39+dfsg.02-3) unstable; urgency=medium
 .
   [ Adrian Bunk ]
   * Fix with shared libfl needless linking
     Closes: #891529
 .
   [ Andreas Tille ]
   * Standards-Version: 4.1.3
   * Do not create empty directories
   * Drop outdated text from README.Debian
Checksums-Sha1:
 aaa9997c360464361809ea88232b981ba10a8078 2255 acedb_4.9.39+dfsg.02-3.dsc
 c86c0df440ca96e05a55cd224199bc638286b0c2 13440 acedb_4.9.39+dfsg.02-3.debian.tar.xz
Checksums-Sha256:
 c71375e61fbffb559e770aa2da30c5e243f2cee7a2aff5d89ab04017d9b2b02c 2255 acedb_4.9.39+dfsg.02-3.dsc
 10ccf8f002094ef0a9cf9c2300566f5d5fbadcd417566d3d76768807967260e5 13440 acedb_4.9.39+dfsg.02-3.debian.tar.xz
Files:
 cd338651cb6bae6c06793e67cad0ae1f 2255 science optional acedb_4.9.39+dfsg.02-3.dsc
 acee54d0d88c3e4d77d0ed69f5cfe727 13440 science optional acedb_4.9.39+dfsg.02-3.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=IjVB
-----END PGP SIGNATURE-----

Send a report that this bug log contains spam.