Debian Bug report logs - #890782
rsem: Please add autopkgtest

Toggle useless messages

Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Andreas Tille <tille@debian.org>

To: Debian Bug Tracking System <submit@bugs.debian.org>

Subject: rsem: Please add autopkgtest

Date: Sun, 18 Feb 2018 21:58:35 +0100

Package: rsem
Version: 1.3.0+dfsg-1
Severity: normal

Hi,

I've uploaded a new version of rsem to experimental since I removed the
code copy of samtools from the source tarball.  To make sure this will
reliably work we should add some test to prove that this replacement
by the Debian packaged code works as expected.

Kind regards

       Andreas.

-- System Information:
Debian Release: 9.0
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.9.0-5-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages rsem depends on:
pn  bowtie | bowtie2  <none>
ii  libc6             2.24-11+deb9u1
ii  libgcc1           1:6.3.0-18
ii  libstdc++6        6.3.0-18
ii  perl              5.24.1-3+deb9u2
ii  python            2.7.13-2
pn  r-base-core       <none>
ii  zlib1g            1:1.2.8.dfsg-5

rsem recommends no packages.

Versions of packages rsem suggests:
pn  r-bioc-ebseq  <none>

Message #10 received at 890782-close@bugs.debian.org (full text, mbox, reply):

From: Katerina Kalou <aik.kalou@gmail.com>

To: 890782-close@bugs.debian.org

Subject: Bug#890782: fixed in rsem 1.3.0+dfsg-2

Date: Fri, 25 May 2018 12:21:34 +0000

Source: rsem
Source-Version: 1.3.0+dfsg-2

We believe that the bug you reported is fixed in the latest version of
rsem, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 890782@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Katerina Kalou <aik.kalou@gmail.com> (supplier of updated rsem package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 25 May 2018 13:56:22 +0200
Source: rsem
Binary: rsem
Architecture: source
Version: 1.3.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Katerina Kalou <aik.kalou@gmail.com>
Description:
 rsem       - RNA-Seq by Expectation-Maximization
Closes: 847569 890782
Changes:
 rsem (1.3.0+dfsg-2) unstable; urgency=medium
 .
   [ Katerina Kalou ]
   * Team upload.
   * Add autopkgtest
     Closes: #890782
 .
   [ Andreas Tille ]
   * Upload to unstable
     Closes: #847569
   * Remove unused lintian-override
   * Drop unused License specification
   * Point Vcs-fields to Salsa
   * Standards-Version: 4.1.4
Checksums-Sha1:
 240b51d49436f165b8ed8bc6a2fd0c72916163e1 2100 rsem_1.3.0+dfsg-2.dsc
 85b2d3a34352f8baaea256cbfeba47106fda1956 35657956 rsem_1.3.0+dfsg-2.debian.tar.xz
Checksums-Sha256:
 5214bbc6fcf2894b3f35c4d6f3f7f6fc46ed8c5aac4c633002c4668409b19929 2100 rsem_1.3.0+dfsg-2.dsc
 a5fefd717e2ebf6db2eae2cf20cbfd5bd23cb3ae6445b8d3d61dfb7513591945 35657956 rsem_1.3.0+dfsg-2.debian.tar.xz
Files:
 cc49b25203557b299d4468b83b662f59 2100 science optional rsem_1.3.0+dfsg-2.dsc
 c412c5a3e4ffa1b5250bc030b24d2def 35657956 science optional rsem_1.3.0+dfsg-2.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=WNQ1
-----END PGP SIGNATURE-----

Send a report that this bug log contains spam.