Debian Bug report logs - #873921
python3.5_3.5.4-3 breaks borgbackup: undefined symbol: PyFPE_jbuf

Toggle useless messages

Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Sven Hartge <sven@svenhartge.de>

To: Debian Bug Tracking System <submit@bugs.debian.org>

Subject: python3.5_3.5.4-3 breaks borgbackup: undefined symbol: PyFPE_jbuf

Date: Fri, 01 Sep 2017 10:47:38 +0200

Package: borgbackup
Version: 1.0.11-3
Severity: grave

Hi!

I am reporting this bug against borgbackup, because I am not sure if the
bug is in python3.5 or borgbackup just needs to be binNMUd. Please
reassign as you see fit.

The upload of python3.5 (3.5.4-3) disables the fpectl extension and
breaks borgbackup:

$ borg
Traceback (most recent call last):
  File "/usr/bin/borg", line 11, in <module>
    load_entry_point('borgbackup==1.0.11', 'console_scripts', 'borg')()
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 564, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2662, in load_entry_point
    return ep.load()
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2316, in load
    return self.resolve()
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2322, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "/usr/lib/python3/dist-packages/borg/archiver.py", line 22, in <module>
    from .helpers import Error, location_validator, archivename_validator, format_line, format_time, format_file_size, \
  File "/usr/lib/python3/dist-packages/borg/helpers.py", line 35, in <module>
    from . import crypto
ImportError: /usr/lib/python3/dist-packages/borg/crypto.cpython-35m-i386-linux-gnu.so: undefined symbol: PyFPE_jbuf

Grüße,
Sven.

-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'testing-debug'), (500, 'unstable'), (500, 'testing'), (200, 'experimental'), (1, 'experimental-debug')
Architecture: i386 (x86_64)
Foreign Architectures: amd64

Kernel: Linux 4.9.0-3-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), LANGUAGE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages borgbackup depends on:
ii  fuse                   2.9.7-1
ii  libacl1                2.2.52-3+b1
ii  libc6                  2.24-17
ii  liblz4-1               0.0~r131-2+b1
pn  libssl1.1              <none>
ii  python3                3.5.3-3
ii  python3-llfuse         1.2+dfsg-1+b1
ii  python3-msgpack        0.4.8-1+b1
ii  python3-pkg-resources  36.2.7-2

borgbackup recommends no packages.

Versions of packages borgbackup suggests:
pn  borgbackup-doc  <none>

-- debconf-show failed

Message #10 received at 873921@bugs.debian.org (full text, mbox, reply):

From: Gianfranco Costamagna <locutusofborg@debian.org>

To: Sven Hartge <sven@svenhartge.de>, <873921@bugs.debian.org>

Subject: Re: Bug#873921: python3.5_3.5.4-3 breaks borgbackup: undefined symbol: PyFPE_jbuf

Date: Fri, 1 Sep 2017 13:06:54 +0000 (UTC)

control: reassign -1 src:python3.5
control: found -1 3.5.4-3
control: notfound -1 3.5.4-2

control: affects -1 src:borgbackup


Hello, I don't know why this should be a borgbackup issue.

If they changed ABI, they have to track the transition


G.

Il Venerdì 1 Settembre 2017 10:51, Sven Hartge <sven@svenhartge.de> ha scritto:



Package: borgbackup

Version: 1.0.11-3

Severity: grave


Hi!


I am reporting this bug against borgbackup, because I am not sure if the

bug is in python3.5 or borgbackup just needs to be binNMUd. Please

reassign as you see fit.


The upload of python3.5 (3.5.4-3) disables the fpectl extension and

breaks borgbackup:


$ borg

Traceback (most recent call last):

  File "/usr/bin/borg", line 11, in <module>

    load_entry_point('borgbackup==1.0.11', 'console_scripts', 'borg')()

  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 564, in load_entry_point

    return get_distribution(dist).load_entry_point(group, name)

  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2662, in load_entry_point

    return ep.load()

  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2316, in load

    return self.resolve()

  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2322, in resolve

    module = __import__(self.module_name, fromlist=['__name__'], level=0)

  File "/usr/lib/python3/dist-packages/borg/archiver.py", line 22, in <module>

    from .helpers import Error, location_validator, archivename_validator, format_line, format_time, format_file_size, \

  File "/usr/lib/python3/dist-packages/borg/helpers.py", line 35, in <module>

    from . import crypto

ImportError: /usr/lib/python3/dist-packages/borg/crypto.cpython-35m-i386-linux-gnu.so: undefined symbol: PyFPE_jbuf


Grüße,

Sven.


-- System Information:

Debian Release: buster/sid

  APT prefers unstable-debug

  APT policy: (500, 'unstable-debug'), (500, 'testing-debug'), (500, 'unstable'), (500, 'testing'), (200, 'experimental'), (1, 'experimental-debug')

Architecture: i386 (x86_64)

Foreign Architectures: amd64


Kernel: Linux 4.9.0-3-amd64 (SMP w/4 CPU cores)

Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), LANGUAGE=de_DE.utf8 (charmap=UTF-8)

Shell: /bin/sh linked to /bin/dash

Init: systemd (via /run/systemd/system)


Versions of packages borgbackup depends on:

ii  fuse                   2.9.7-1

ii  libacl1                2.2.52-3+b1

ii  libc6                  2.24-17

ii  liblz4-1               0.0~r131-2+b1

pn  libssl1.1              <none>

ii  python3                3.5.3-3

ii  python3-llfuse         1.2+dfsg-1+b1

ii  python3-msgpack        0.4.8-1+b1

ii  python3-pkg-resources  36.2.7-2


borgbackup recommends no packages.


Versions of packages borgbackup suggests:

pn  borgbackup-doc  <none>


-- debconf-show failed

Message #29 received at 873921@bugs.debian.org (full text, mbox, reply):

From: Adrian Bunk <bunk@debian.org>

To: Matthias Klose <doko@debian.org>

Cc: 873791@bugs.debian.org, 873921@bugs.debian.org

Subject: Re: Bug#873791: [python-numpy] Undefined symbols on several architectures

Date: Mon, 4 Sep 2017 00:59:58 +0300

[Message part 1 (text/plain, inline)]

Control: reopen -1

On Thu, Aug 31, 2017 at 12:48:53PM +0200, Matthias Klose wrote:
> On 31.08.2017 12:35, Adrian Bunk wrote:
> > Control: reassign -1 python2.7 2.7.14~rc1-1
> > Control: retitle -1 python2.7: fpectl extension removal broke the ABI for C extensions
> > Control: affects -1 python-numpy
> > 
> > On Thu, Aug 31, 2017 at 11:34:55AM +0200, Michał Klichowicz wrote:
> >> Got that error on amd64, too.
> >>
> >> This started today, after the upgrading python2.7 packages to 2.7.14~rc1
> >> in sid. Downgrading back to buster's 2.7.13-2 solves the problem.
> > 
> > I got the same error with Cython:
> > 
> > ImportError: /usr/lib/python2.7/dist-packages/Cython/Compiler/Code.x86_64-linux-gnu.so: undefined symbol: PyFPE_jbuf.  You should look at http://www.cython.org" 
> > 
> > It seems the following change in 2.7.14~rc1-1 broke the ABI:
> >   * Stop building the fpectl extension.
> 
> yes, that's intended. I'll add a break.  Are there other known packages besides
> python-numpy?

A complete list of all packages in unstable on amd64 that need rebuild
and Breaks is attached.

Additionally, Breaks are required for the following packages
that were already fixed in sid:
- cython
- cython3
- python-lxml
- python3-lxml

To avoid breaking testing, please keep these bugs open and RC until
all Breaks are in place.

cu
Adrian

-- 

       "Is there not promise of rain?" Ling Tan asked suddenly out
        of the darkness. There had been need of rain for many days.
       "Only a promise," Lao Er said.
                                       Pearl S. Buck - Dragon Seed

[PyFPE-sid (text/plain, attachment)]

Message #36 received at 873921@bugs.debian.org (full text, mbox, reply):

From: Adrian Bunk <bunk@debian.org>

To: Matthias Klose <doko@debian.org>, 873791@bugs.debian.org, 873921@bugs.debian.org

Subject: Re: Bug#873791: [python-numpy] Undefined symbols on several architectures

Date: Mon, 4 Sep 2017 10:45:07 +0300

[Message part 1 (text/plain, inline)]

A binNMU list is attached.

cu
Adrian

-- 

       "Is there not promise of rain?" Ling Tan asked suddenly out
        of the darkness. There had been need of rain for many days.
       "Only a promise," Lao Er said.
                                       Pearl S. Buck - Dragon Seed

[PyFPE-nmus (text/plain, attachment)]

Message #51 received at 873921-close@bugs.debian.org (full text, mbox, reply):

From: Matthias Klose <doko@debian.org>

To: 873921-close@bugs.debian.org

Subject: Bug#873921: fixed in python3.5 3.5.4-4

Date: Tue, 05 Sep 2017 19:06:54 +0000

Source: python3.5
Source-Version: 3.5.4-4

We believe that the bug you reported is fixed in the latest version of
python3.5, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 873921@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Matthias Klose <doko@debian.org> (supplier of updated python3.5 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Tue, 05 Sep 2017 20:32:10 +0200
Source: python3.5
Binary: python3.5 python3.5-venv libpython3.5-stdlib python3.5-minimal libpython3.5-minimal libpython3.5 python3.5-examples python3.5-dev libpython3.5-dev libpython3.5-testsuite idle-python3.5 python3.5-doc python3.5-dbg libpython3.5-dbg
Architecture: source
Version: 3.5.4-4
Distribution: unstable
Urgency: medium
Maintainer: Matthias Klose <doko@debian.org>
Changed-By: Matthias Klose <doko@debian.org>
Description:
 idle-python3.5 - IDE for Python (v3.5) using Tkinter
 libpython3.5 - Shared Python runtime library (version 3.5)
 libpython3.5-dbg - Debug Build of the Python Interpreter (version 3.5)
 libpython3.5-dev - Header files and a static library for Python (v3.5)
 libpython3.5-minimal - Minimal subset of the Python language (version 3.5)
 libpython3.5-stdlib - Interactive high-level object-oriented language (standard library
 libpython3.5-testsuite - Testsuite for the Python standard library (v3.5)
 python3.5  - Interactive high-level object-oriented language (version 3.5)
 python3.5-dbg - Debug Build of the Python Interpreter (version 3.5)
 python3.5-dev - Header files and a static library for Python (v3.5)
 python3.5-doc - Documentation for the high-level object-oriented language Python
 python3.5-examples - Examples for the Python language (v3.5)
 python3.5-minimal - Minimal subset of the Python language (version 3.5)
 python3.5-venv - Interactive high-level object-oriented language (pyvenv binary, v
Closes: 873921
Changes:
 python3.5 (3.5.4-4) unstable; urgency=medium
 .
   * Add package breaks for extensions referencing symbols for the removed
     _PyFPE module. Closes: #873921.
Checksums-Sha1:
 c63ec384041697d5d674a65905415d1fe042a8d3 3367 python3.5_3.5.4-4.dsc
 debea0efe6a112c377300e39bf462a7ae198e94d 235636 python3.5_3.5.4-4.debian.tar.xz
 170fc44934fe1e96f95ac8f4d9eade82422de48c 9353 python3.5_3.5.4-4_source.buildinfo
Checksums-Sha256:
 0861056b92ba4ad189fd4be9b8b81101286466bd7002c07f7ab4427dbbd7b899 3367 python3.5_3.5.4-4.dsc
 06d56fb72faa7dc22a1b5957d411f3bda9901a040c714adfe75e8bb7a4b629aa 235636 python3.5_3.5.4-4.debian.tar.xz
 f93f86610b3742078895af8e8299dabb63facedbba091b4ef072ffc7fa4a7718 9353 python3.5_3.5.4-4_source.buildinfo
Files:
 b66f3b09a16cea1365d6c0b68bacfcad 3367 python optional python3.5_3.5.4-4.dsc
 192f470e030d1b960320c68bfa3d9eef 235636 python optional python3.5_3.5.4-4.debian.tar.xz
 ffc93e6f7b501978134847c6334abef4 9353 python optional python3.5_3.5.4-4_source.buildinfo

-----BEGIN PGP SIGNATURE-----
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=u4dj
-----END PGP SIGNATURE-----

Message #84 received at 873921@bugs.debian.org (full text, mbox, reply):

From: Luc Didry <luc@didry.org>

To: 873921@bugs.debian.org

Subject: Re: Bug#873921: fixed in python3.5 3.5.4-4

Date: Thu, 07 Sep 2017 18:55:28 +0200

I have the same bug, but unfortunately am unable to install python3.5 3.5.4-4 to
test it with borgbackup: apt asks to remove (borgbackup and python3-llfuse) when
trying to upgrade python3.5.
-- 
Luc
https://fiat-tux.fr/
https://luc.frama.io/
Internet n'est pas compliqué, Internet est ce que vous en faites.

Message #89 received at 873921@bugs.debian.org (full text, mbox, reply):

From: Jonathan Zacsh <jzacsh@gmail.com>

To: 873921@bugs.debian.org

Subject: Re: Bug#873921: fixed in python3.5 3.5.4-4

Date: Fri, 8 Sep 2017 00:17:31 -0400

[Message part 1 (text/plain, inline)]

Hmm... my problem started as of this bug, but perhaps the below reveals
I've a different issue? Feel free to point me elsewhere, but posting here
just in case:

  $ apt install borgbackup
  Reading package lists... Done
  Building dependency tree
  Reading state information... Done
  Some packages could not be installed. This may mean that you have
  requested an impossible situation or if you are using the unstable
  distribution that some required packages have not yet been created
  or been moved out of Incoming.
  The following information may help to resolve the situation:

  The following packages have unmet dependencies:
   borgbackup : Depends: python3-llfuse (< 2.0) but it is not going to be
installed
                Depends: python3-msgpack (>= 0.4.6~) but it is not going to
be installed
                Depends: python3-pkg-resources but it is not going to be
installed
                Depends: python3 (< 3.6) but it is not going to be installed
                Depends: python3 (>= 3.5~) but it is not going to be
installed
                Depends: python3:any (>= 3.3.2-2~)
  E: Unable to correct problems, you have held broken packages.

  $ apt-mark showhold
  $ dpkg -l | grep -E '^hi'

  $ for pkg in python3{,-{llfuse,msgpack,pkg-resources}}; do echo -e
"\n\nCHECKING PKG: '$pkg'"; aptitude why-not "$pkg";done

  # snipped, only python3-llfuse is problematic...

  CHECKING PKG: 'python3-llfuse'
  i   virtualbox          Depends libpython3.5 (>= 3.5.0~b1)
  i A libpython3.5        Depends libpython3.5-stdlib (= 3.5.4-4)
  i A libpython3.5-stdlib Breaks  python3-llfuse (<= 1.2+dfsg-1+b1)

On Thu, 07 Sep 2017 18:55:28 +0200 Luc Didry <luc@didry.org> wrote:
> I have the same bug, but unfortunately am unable to install python3.5
3.5.4-4 to
> test it with borgbackup: apt asks to remove (borgbackup and
python3-llfuse) when
> trying to upgrade python3.5.
> --
> Luc
> https://fiat-tux.fr/
> https://luc.frama.io/
> Internet n'est pas compliqué, Internet est ce que vous en faites.
>
>
>

[Message part 2 (text/html, inline)]

Message #94 received at 873921@bugs.debian.org (full text, mbox, reply):

From: Jonathan Zacsh <jzacsh@gmail.com>

To: 873921@bugs.debian.org

Date: Fri, 8 Sep 2017 16:08:06 -0400

[Message part 1 (text/plain, inline)]

oh, ignore my last comment - fixed as of some updates I got today.

[Message part 2 (text/html, inline)]

Message #99 received at 873921@bugs.debian.org (full text, mbox, reply):

From: Salvatore Bonaccorso <carnil@debian.org>

To: Jonathan Zacsh <jzacsh@gmail.com>, 873921@bugs.debian.org

Subject: Re: Bug#873921:

Date: Sun, 10 Sep 2017 10:59:41 +0200

Hi Jonathan,

On Fri, Sep 08, 2017 at 04:08:06PM -0400, Jonathan Zacsh wrote:
> oh, ignore my last comment - fixed as of some updates I got today.

This was because so called binNMU's were sheduled for all the affected
packages, rebuilding against the new python packages, including
borgbackup.

Regards,
Salvatore

Message #104 received at 873921@bugs.debian.org (full text, mbox, reply):

From: Luc Didry <luc@didry.org>

To: 873921@bugs.debian.org

Subject: Re: Bug#873921:

Date: Sun, 10 Sep 2017 16:10:37 +0200

With the new version of borgbackup (1.0.11-3+b1), all works fine!

Thank you 🙂
-- 
Luc
https://fiat-tux.fr/
https://luc.frama.io/
Internet n'est pas compliqué, Internet est ce que vous en faites.

Send a report that this bug log contains spam.