Debian Bug report logs - #863208
mash sometimes FTBFS in parallel builds

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Adrian Bunk <bunk@debian.org>

To: Debian Bug Tracking System <submit@bugs.debian.org>

Subject: mash sometimes FTBFS in parallel builds

Date: Tue, 23 May 2017 18:10:40 +0300

[Message part 1 (text/plain, inline)]

Source: mash
Version: 1.1.1-1
Severity: serious
Tags: patch

https://buildd.debian.org/status/fetch.php?pkg=mash&arch=ppc64el&ver=1.1.1-1&stamp=1472296851&raw=0

...
dh_auto_build
	make -j4
make[2]: Entering directory '/«PKGBUILDDIR»'
cd src/mash/capnp;export PATH=/usr/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ MinHash.capnp
cd src/mash/capnp;export PATH=/usr/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ MinHash.capnp
g++ -c -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2  -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++
g++ -c -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2  -o src/mash/Command.o src/mash/Command.cpp
g++ -c -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2  -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp
g++ -c -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2  -o src/mash/CommandContain.o src/mash/CommandContain.cpp
src/mash/capnp/MinHash.capnp.c++:581:23: error: expected primary-expression at end of input
       9,   0,   0,   0,   0,   0,   0,   0,
                       ^
src/mash/capnp/MinHash.capnp.c++:581:23: error: expected ‘}’ at end of input
src/mash/capnp/MinHash.capnp.c++:581:23: error: expected ‘}’ at end of input
src/mash/capnp/MinHash.capnp.c++:581:23: error: expected ‘,’ or ‘;’ at end of input
src/mash/capnp/MinHash.capnp.c++:581:23: error: expected ‘}’ at end of input
src/mash/capnp/MinHash.capnp.c++:581:23: error: expected ‘}’ at end of input
Makefile:47: recipe for target 'src/mash/capnp/MinHash.capnp.o' failed
make[2]: *** [src/mash/capnp/MinHash.capnp.o] Error 1


This is caused by "capnp compile" running twice in parallel,
fix is attached.

[parallel.patch (text/plain, attachment)]

Message #10 received at 863208-close@bugs.debian.org (full text, mbox, reply):

From: Sascha Steinbiss <satta@debian.org>

To: 863208-close@bugs.debian.org

Subject: Bug#863208: fixed in mash 1.1.1-2

Date: Wed, 24 May 2017 09:33:59 +0000

Source: mash
Source-Version: 1.1.1-2

We believe that the bug you reported is fixed in the latest version of
mash, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 863208@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sascha Steinbiss <satta@debian.org> (supplier of updated mash package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 24 May 2017 08:43:17 +0000
Source: mash
Binary: mash libmash-dev mash-doc
Architecture: source amd64 all
Version: 1.1.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
 libmash-dev - development headers and static library for Mash
 mash       - fast genome and metagenome distance estimation using MinHash
 mash-doc   - documentation for Mash
Closes: 863208
Changes:
 mash (1.1.1-2) unstable; urgency=medium
 .
   * Fix parallel building FTBFS. Thanks to Adrian Bunk for the patch.
     Closes: #863208
Checksums-Sha1:
 b3f191b32d5394488741810432a0d9d21fca8207 1781 mash_1.1.1-2.dsc
 85617564274c2124e129308ef9ba0bde94e0aacc 2157580 mash_1.1.1-2.debian.tar.xz
 8509705b6b78161c717fd7f402ff1b6ea8d03aaf 151344 libmash-dev_1.1.1-2_amd64.deb
 727409d51ed555effbf81a73d7333174e0c89b4f 1972668 mash-dbgsym_1.1.1-2_amd64.deb
 40dba52841dd87c70cc1cd39f9fe0f609dd6f449 72428 mash-doc_1.1.1-2_all.deb
 4d4e7738418c4f3523a0e67b9f625bd2b91845e6 7353 mash_1.1.1-2_amd64.buildinfo
 164eefc566a694d38d0bc040928054c144cdb3b3 126118 mash_1.1.1-2_amd64.deb
Checksums-Sha256:
 1ab30ffa320eb46a6bf823875d6d8c3517321650ac3c6f475b1892363c0a7594 1781 mash_1.1.1-2.dsc
 2ac7891c9f0031ee313ee6c20531d79f12c2b2f54370a8848b2eaa79b4c7fa74 2157580 mash_1.1.1-2.debian.tar.xz
 5d6b3194372376dce89f72b75b1f43dcac687e10007ae2f6637facba6c550368 151344 libmash-dev_1.1.1-2_amd64.deb
 5ed8e9230d7ec7ad57fce4b7dbe7858205990cb4373a63806af6eabc7041dd1d 1972668 mash-dbgsym_1.1.1-2_amd64.deb
 709d578a085f9da9a2a55bb3b9145b52dcd3b1cef29160401c25a63a38b0b106 72428 mash-doc_1.1.1-2_all.deb
 85c98304aa6e4f164f7307117a1178e199bc1a92d4069fed3b6650be778822ed 7353 mash_1.1.1-2_amd64.buildinfo
 82d77807a40c36aab1b7e2c60cbc912f1de33f6b177a30a811bf62e0d8966ac9 126118 mash_1.1.1-2_amd64.deb
Files:
 12da1681f79540bc7793f6159a2a427d 1781 science optional mash_1.1.1-2.dsc
 eae33e0c5a8f8b537cef998b016c55a4 2157580 science optional mash_1.1.1-2.debian.tar.xz
 5da787a0a2fa3ef728f41c0913f31fbf 151344 libdevel optional libmash-dev_1.1.1-2_amd64.deb
 c2781e100597eebe4eb91407709a6569 1972668 debug extra mash-dbgsym_1.1.1-2_amd64.deb
 472f313afb613edcea92cbffec03338c 72428 doc optional mash-doc_1.1.1-2_all.deb
 923b32c03323b25f8da77504a54d5438 7353 science optional mash_1.1.1-2_amd64.buildinfo
 630a40ec8d5fdcaebe32a400fcfa85f1 126118 science optional mash_1.1.1-2_amd64.deb

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