Debian Bug report logs - #840140
fastx-toolkit: please make the build reproducible

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Chris Lamb <lamby@debian.org>

To: submit@bugs.debian.org

Subject: fastx-toolkit: please make the build reproducible

Date: Sat, 08 Oct 2016 20:28:18 +0100

[Message part 1 (text/plain, inline)]

Source: fastx-toolkit
Version: 0.0.14-1
Severity: wishlist
Tags: patch
User: reproducible-builds@lists.alioth.debian.org
Usertags: buildpath
X-Debbugs-Cc: reproducible-builds@lists.alioth.debian.org

Hi,

Whilst working on the Reproducible Builds effort [0], we noticed
that fastx-toolkit could not be built reproducibly.

Patch attached.

I ended up patching upstream sources instead of fixing/extending the
regexes in debian/rules; the result is subjectively far cleaner and
objectively less brittle.


 [0] https://reproducible-builds.org/


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org / chris-lamb.co.uk
       `-

[fastx-toolkit.diff.txt (text/plain, attachment)]

Message #10 received at 840140@bugs.debian.org (full text, mbox, reply):

From: Sascha Steinbiss <satta@debian.org>

To: 840140@bugs.debian.org

Subject: Re: fastx-toolkit: please make the build reproducible

Date: Fri, 14 Oct 2016 21:40:03 +0200

Hi Chris,

thanks for the report. I just took a look at the patch and now it seems that there are no man pages built for fasta_clipping_histogram.pl and 
fastx_barcode_splitter.pl at all any more, is that intentional?

Cheers
Sascha

On Sat, 08 Oct 2016 20:28:18 +0100 Chris Lamb <lamby@debian.org> wrote:
> Source: fastx-toolkit
> Version: 0.0.14-1
> Severity: wishlist
> Tags: patch
> User: reproducible-builds@lists.alioth.debian.org
> Usertags: buildpath
> X-Debbugs-Cc: reproducible-builds@lists.alioth.debian.org
> 
> Hi,
> 
> Whilst working on the Reproducible Builds effort [0], we noticed
> that fastx-toolkit could not be built reproducibly.
> 
> Patch attached.
> 
> I ended up patching upstream sources instead of fixing/extending the
> regexes in debian/rules; the result is subjectively far cleaner and
> objectively less brittle.
> 
> 
>  [0] https://reproducible-builds.org/
> 
> 
> Regards,
> 
> -- 
>       ,''`.
>      : :'  :     Chris Lamb
>      `. `'`      lamby@debian.org / chris-lamb.co.uk
>        `-

Message #15 received at 840140-close@bugs.debian.org (full text, mbox, reply):

From: Andreas Tille <tille@debian.org>

To: 840140-close@bugs.debian.org

Subject: Bug#840140: fixed in fastx-toolkit 0.0.14-3

Date: Sat, 10 Dec 2016 09:03:24 +0000

Source: fastx-toolkit
Source-Version: 0.0.14-3

We believe that the bug you reported is fixed in the latest version of
fastx-toolkit, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 840140@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated fastx-toolkit package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 10 Dec 2016 08:59:40 +0100
Source: fastx-toolkit
Binary: fastx-toolkit
Architecture: source amd64
Version: 0.0.14-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
Closes: 840140
Changes:
 fastx-toolkit (0.0.14-3) unstable; urgency=low
 .
   [ Steffen Moeller ]
   361a318 Added EDAM annotation for fastx-toolkit.
 .
   [ Andreas Tille ]
   * Make Build reproducible (thanks for the patch to Chris Lamb
     <lamby@debian.org>, the change in d/rules to suppress creation
     of manpages was reverted)
     Closes: #840140
   * cme fix dpkg-control
   * debhelper 10
   * d/watch: version=4
   * Git repository converted to default layout
   * hardening=+all
Checksums-Sha1:
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 9f3326ad4d6e1138bb2f093e45100cecc56f5d85 17376 fastx-toolkit_0.0.14-3.debian.tar.xz
 ba2b6c44aa835d67240a68ecf877737b911a5b0f 450624 fastx-toolkit-dbgsym_0.0.14-3_amd64.deb
 c828f5ee37e45ce42911d766de2c9f0a2228c783 5858 fastx-toolkit_0.0.14-3_amd64.buildinfo
 43e08c62ce18eada12966d320997e25bf62f2324 90244 fastx-toolkit_0.0.14-3_amd64.deb
Checksums-Sha256:
 42c908ae86462e7d3501c976b89d1ecc8175c2646649173fb0801457244c891a 2172 fastx-toolkit_0.0.14-3.dsc
 42db23426a1ef607f5444c8275e7b2c904db4b3f16c3204fae16db1aab151ff2 17376 fastx-toolkit_0.0.14-3.debian.tar.xz
 e7ffac036aac172895a142c494cf7bbab1c5f136cf18bf9f2d3d0749f612db67 450624 fastx-toolkit-dbgsym_0.0.14-3_amd64.deb
 27d4602159d04b3e3d057d1dd0ea2b95652c622dc3ca629c7edb9079598aba6e 5858 fastx-toolkit_0.0.14-3_amd64.buildinfo
 f1fa9a6198c4a5a15b55323aacc13ef7d79b61bc6d956e75875b784d6e14d040 90244 fastx-toolkit_0.0.14-3_amd64.deb
Files:
 733792af19a0dd0735ce7c46fa8c2a55 2172 science optional fastx-toolkit_0.0.14-3.dsc
 de1a9be194a2a6b2d690809729327591 17376 science optional fastx-toolkit_0.0.14-3.debian.tar.xz
 d0c6b092823c3b302f06c29ff9079c6b 450624 debug extra fastx-toolkit-dbgsym_0.0.14-3_amd64.deb
 084645c264878e83a7c29febce50c316 5858 science optional fastx-toolkit_0.0.14-3_amd64.buildinfo
 e37a86c0957b40871aed231c21bfb44a 90244 science optional fastx-toolkit_0.0.14-3_amd64.deb

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