Debian Bug report logs - #835406
trilinos: FTBFS on 32-bit architectures

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: "Aaron M. Ucko" <amu@alum.mit.edu>

To: Debian Bug Tracking System <submit@bugs.debian.org>

Subject: trilinos: FTBFS on non-amd64

Date: Tue, 23 Feb 2016 23:10:04 -0500

Source: trilinos
Version: 12.4.2-1
Severity: important
Justification: fails to build from source

Builds of trilinos for architectures other than amd64 have been
failing; please either address these errors or set its Architecture
field accordingly.  Specifically:

- On 32-bit architectures such as i386, there are errors related to
  type usage, starting with

  /«PKGBUILDDIR»/packages/kokkos/core/src/impl/Kokkos_Atomic_Generic.hpp:144:49: error: no matching function for call to 'atomic_compare_exchange(long long unsigned int*, long long unsigned int&, long long unsigned int&)'
       oldval.i = ::Kokkos::atomic_compare_exchange( (unsigned long long int*)dest , assume.i , newval.i );

- On 64-bit architectures other than amd64, there are errors related
  to the use of x86 assembly:

  /tmp/ccSfso5b.s: Assembler messages:
  /tmp/ccSfso5b.s:2095: Error: unknown mnemonic `lock' -- `lock incl[x1,88]'
  /tmp/ccSfso5b.s:2213: Error: unknown mnemonic `lock' -- `lock incl[x1,92]'
  /tmp/ccSfso5b.s:2330: Error: unknown mnemonic `lock' -- `lock incl[x1,68]'
  /tmp/ccSfso5b.s:3627: Error: unknown mnemonic `lock' -- `lock decl[x20]'
  /tmp/ccSfso5b.s:3732: Error: unknown mnemonic `lock' -- `lock decl[x20]'
  packages/kokkos/core/src/CMakeFiles/trilinos_kokkoscore.dir/build.make:401: recipe for target 'packages/kokkos/core/src/CMakeFiles/trilinos_kokkoscore.dir/Threads/Kokkos_Threads_TaskPolicy.cpp.o' failed

Could you please take a look?

Thanks!

Message #10 received at 815725@bugs.debian.org (full text, mbox, reply):

From: Nico Schlömer <nico.schloemer@gmail.com>

To: 815725@bugs.debian.org

Date: Fri, 27 May 2016 13:22:04 +0000

[Message part 1 (text/plain, inline)]

Trilinos, specifically Kokkos, only support 64bit-architectures. The build
failure on i386 is therefore expected.

I've compiled trilinos on  ppc64el and could no reproduce the error [1].
Perhaps that's something that's accidentally been fixed in the meantime?

Cheers,
Nico

[1]
https://launchpadlibrarian.net/261874013/buildlog_ubuntu-yakkety-ppc64el.trilinos_12.7~20160527031607-e5abd8d8-1yakkety1_BUILDING.txt.gz

[Message part 2 (text/html, inline)]

Message #21 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Graham Inggs <ginggs@debian.org>

To: "Aaron M. Ucko" <amu@alum.mit.edu>, 835406@bugs.debian.org

Subject: trilinos: FTBFS on 32-bit architectures

Date: Mon, 29 Aug 2016 17:05:01 +0200

[Message part 1 (text/plain, inline)]

Control: -1 patch


Hi Aaron

I cloned bug #815725 as a wishlist bug for 32-bit architectures, since 
upstream only want to support 64-bit.  I was able to fix the use of x86 
assembly on other 64-bit architectures and closed the original bug.  New 
builds were successful on arm64, mips64el, alpha and sparc64.  Trilinos 
also built on s390x in Ubuntu where they have a working libtbb for s390x.

I did some further experimentation and came up with a patch (attached) 
to build Kokkos (and thus a complete Trilinos as well) on 32-bit 
architectures.
I have successfully built trilinos on i386 and armhf, and builds on 
amd64, arm64 and ppc64el remained successful.  Ithen successfully built 
deal.II against the new Trilinos packages on all of the aforementioned 
architectures, although the deal.II tests eventually timed out on armhf.

If there are no objections, I will upload Trilinos including this patch 
within this week.

Regards
Graham

[kokkos-32-bit.patch (text/x-diff, attachment)]

Message #28 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Nico Schlömer <nico.schloemer@gmail.com>

To: Graham Inggs <ginggs@debian.org>, 835406@bugs.debian.org, "Aaron M. Ucko" <amu@alum.mit.edu>

Subject: Re: Bug#835406: trilinos: FTBFS on 32-bit architectures

Date: Mon, 29 Aug 2016 19:55:06 +0000

[Message part 1 (text/plain, inline)]

> I have successfully built trilinos on i386 and armhf,

This is amazing! We can certainly upstream those patches, too.

When uploading, we could perhaps also include the point release 12.6.4.
(Current Debian is 12.6.3.)

Cheers,
Nico

On Mon, Aug 29, 2016 at 5:09 PM Graham Inggs <ginggs@debian.org> wrote:

> Control: -1 patch
>
>
> Hi Aaron
>
> I cloned bug #815725 as a wishlist bug for 32-bit architectures, since
> upstream only want to support 64-bit.  I was able to fix the use of x86
> assembly on other 64-bit architectures and closed the original bug.  New
> builds were successful on arm64, mips64el, alpha and sparc64.  Trilinos
> also built on s390x in Ubuntu where they have a working libtbb for s390x.
>
> I did some further experimentation and came up with a patch (attached)
> to build Kokkos (and thus a complete Trilinos as well) on 32-bit
> architectures.
> I have successfully built trilinos on i386 and armhf, and builds on
> amd64, arm64 and ppc64el remained successful.  Ithen successfully built
> deal.II against the new Trilinos packages on all of the aforementioned
> architectures, although the deal.II tests eventually timed out on armhf.
>
> If there are no objections, I will upload Trilinos including this patch
> within this week.
>
> Regards
> Graham
>
>

[Message part 2 (text/html, inline)]

Message #33 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Graham Inggs <ginggs@debian.org>

To: Nico Schlömer <nico.schloemer@gmail.com>

Cc: 835406@bugs.debian.org, "Aaron M. Ucko" <amu@alum.mit.edu>

Subject: Re: Bug#835406: trilinos: FTBFS on 32-bit architectures

Date: Mon, 29 Aug 2016 23:08:23 +0200

On 29 August 2016 at 21:55, Nico Schlömer <nico.schloemer@gmail.com> wrote:
> When uploading, we could perhaps also include the point release 12.6.4.
> (Current Debian is 12.6.3.)

Sure, let's do that.

Do you have time now to prepare 12.6.4 for upload?  I can rebase and
test my patches against that version.
Otherwise, if you think it will be straightforward, I can just do it.

Message #38 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Nico Schlömer <nico.schloemer@gmail.com>

To: Graham Inggs <ginggs@debian.org>

Cc: 835406@bugs.debian.org, "Aaron M. Ucko" <amu@alum.mit.edu>

Subject: Re: Bug#835406: trilinos: FTBFS on 32-bit architectures

Date: Mon, 29 Aug 2016 21:15:48 +0000

[Message part 1 (text/plain, inline)]

> if you think it will be straightforward

Definitely. Nothing spectacular has happened upstream. (If, suprisingly, it
should happend to FTBFS, let me know and I'll get it straight.)

Cheers,
Nico

On Mon, Aug 29, 2016 at 11:08 PM Graham Inggs <ginggs@debian.org> wrote:

> On 29 August 2016 at 21:55, Nico Schlömer <nico.schloemer@gmail.com>
> wrote:
> > When uploading, we could perhaps also include the point release 12.6.4.
> > (Current Debian is 12.6.3.)
>
> Sure, let's do that.
>
> Do you have time now to prepare 12.6.4 for upload?  I can rebase and
> test my patches against that version.
> Otherwise, if you think it will be straightforward, I can just do it.
>

[Message part 2 (text/html, inline)]

Message #43 received at 835406-close@bugs.debian.org (full text, mbox, reply):

From: Graham Inggs <ginggs@debian.org>

To: 835406-close@bugs.debian.org

Subject: Bug#835406: fixed in trilinos 12.6.4-1

Date: Tue, 30 Aug 2016 12:21:31 +0000

Source: trilinos
Source-Version: 12.6.4-1

We believe that the bug you reported is fixed in the latest version of
trilinos, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 835406@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Graham Inggs <ginggs@debian.org> (supplier of updated trilinos package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Tue, 30 Aug 2016 11:46:35 +0200
Source: trilinos
Binary: trilinos-all-dev trilinos-dev libtrilinos-amesos12 libtrilinos-amesos-dev libtrilinos-amesos2-12 libtrilinos-amesos2-dev libtrilinos-anasazi12 libtrilinos-anasazi-dev libtrilinos-aztecoo12 libtrilinos-aztecoo-dev libtrilinos-belos12 libtrilinos-belos-dev libtrilinos-epetra12 libtrilinos-epetra-dev libtrilinos-epetraext12 libtrilinos-epetraext-dev libtrilinos-galeri12 libtrilinos-galeri-dev libtrilinos-globipack12 libtrilinos-globipack-dev libtrilinos-ifpack12 libtrilinos-ifpack-dev libtrilinos-ifpack2-12 libtrilinos-ifpack2-dev libtrilinos-intrepid12 libtrilinos-intrepid-dev libtrilinos-isorropia12 libtrilinos-isorropia-dev libtrilinos-kokkos12 libtrilinos-kokkos-dev libtrilinos-komplex12 libtrilinos-komplex-dev libtrilinos-ml12 libtrilinos-ml-dev libtrilinos-moertel12 libtrilinos-moertel-dev libtrilinos-muelu12 libtrilinos-muelu-dev libtrilinos-nox12 libtrilinos-nox-dev libtrilinos-optipack12 libtrilinos-optipack-dev libtrilinos-pamgen12 libtrilinos-pamgen-dev
 libtrilinos-phalanx12 libtrilinos-phalanx-dev libtrilinos-pike12 libtrilinos-pike-dev libtrilinos-piro12 libtrilinos-piro-dev libtrilinos-pliris12 libtrilinos-pliris-dev libtrilinos-rol12 libtrilinos-rol-dev libtrilinos-rtop12 libtrilinos-rtop-dev libtrilinos-rythmos12 libtrilinos-rythmos-dev libtrilinos-sacado12 libtrilinos-sacado-dev libtrilinos-shards12 libtrilinos-shards-dev libtrilinos-shylu12 libtrilinos-shylu-dev libtrilinos-stokhos12 libtrilinos-stokhos-dev libtrilinos-stratimikos12 libtrilinos-stratimikos-dev libtrilinos-teko12 libtrilinos-teko-dev libtrilinos-teuchos12 libtrilinos-teuchos-dev libtrilinos-thyra12 libtrilinos-thyra-dev libtrilinos-tpetra12 libtrilinos-tpetra-dev libtrilinos-trilinoscouplings12 libtrilinos-trilinoscouplings-dev libtrilinos-triutils12 libtrilinos-triutils-dev libtrilinos-xpetra12 libtrilinos-xpetra-dev libtrilinos-zoltan12 libtrilinos-zoltan-dev libtrilinos-zoltan2-12 libtrilinos-zoltan2-dev
 trilinos-doc
Architecture: source
Version: 12.6.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Graham Inggs <ginggs@debian.org>
Description:
 libtrilinos-amesos-dev - direct sparse solver package - development files
 libtrilinos-amesos12 - direct sparse solver package - runtime files
 libtrilinos-amesos2-12 - next generation direct sparse solver package - runtime files
 libtrilinos-amesos2-dev - next generation direct sparse solver package - development files
 libtrilinos-anasazi-dev - large-scale eigenvalue algorithms - development files
 libtrilinos-anasazi12 - large-scale eigenvalue algorithms - runtime files
 libtrilinos-aztecoo-dev - object-oriented interface to the Aztec solver - development files
 libtrilinos-aztecoo12 - object-oriented interface to the Aztec solver - runtime files
 libtrilinos-belos-dev - iterative linear solvers - development files
 libtrilinos-belos12 - iterative linear solvers - runtime files
 libtrilinos-epetra-dev - basis package for linear algebra - development files
 libtrilinos-epetra12 - basis package for linear algebra - runtime files
 libtrilinos-epetraext-dev - extensions to the Epetra toolkit - development files
 libtrilinos-epetraext12 - extensions to the Epetra toolkit - runtime files
 libtrilinos-galeri-dev - generation of distributed linear systems - development files
 libtrilinos-galeri12 - generation of distributed linear systems - runtime files
 libtrilinos-globipack-dev - 1D globalization capabilities - development files
 libtrilinos-globipack12 - 1D globalization capabilities - runtime files
 libtrilinos-ifpack-dev - algebraic preconditioners - development files
 libtrilinos-ifpack12 - algebraic preconditioners - runtime files
 libtrilinos-ifpack2-12 - next generation algebraic preconditioners - runtime files
 libtrilinos-ifpack2-dev - next generation algebraic preconditioners - development files
 libtrilinos-intrepid-dev - compatible discretizations of PDEs - development files
 libtrilinos-intrepid12 - compatible discretizations of PDEs - runtime files
 libtrilinos-isorropia-dev - partitioning, load balancing, coloring of sparse matrices - devel
 libtrilinos-isorropia12 - partitioning, load balancing, coloring of sparse matrices - runti
 libtrilinos-kokkos-dev - Trilinos core kernels - development files
 libtrilinos-kokkos12 - Trilinos core kernels - runtime files
 libtrilinos-komplex-dev - complex linear solver package - development files
 libtrilinos-komplex12 - complex linear solver package - runtime files
 libtrilinos-ml-dev - multigrid preconditioning - development files
 libtrilinos-ml12 - multigrid preconditioning - runtime files
 libtrilinos-moertel-dev - mortar methods package - development files
 libtrilinos-moertel12 - mortar methods package - runtime files
 libtrilinos-muelu-dev - next generation multilevel preconditioner capabilities - developm
 libtrilinos-muelu12 - next generation multilevel preconditioner capabilities - runtime
 libtrilinos-nox-dev - robust solution of nonlinear equations - development files
 libtrilinos-nox12 - robust solution of nonlinear equations - runtime files
 libtrilinos-optipack-dev - Trilinos optimization algorithms - development files
 libtrilinos-optipack12 - Trilinos optimization algorithms - runtime files
 libtrilinos-pamgen-dev - hexahedral and quadrilateral mesh generator - development files
 libtrilinos-pamgen12 - hexahedral and quadrilateral mesh generator - runtime files
 libtrilinos-phalanx-dev - local field evaluation kernel - development files
 libtrilinos-phalanx12 - local field evaluation kernel - runtime files
 libtrilinos-pike-dev - physics integration kernels - development files
 libtrilinos-pike12 - physics integration kernels - runtime files
 libtrilinos-piro-dev - embedded nonlinear analysis package - development files
 libtrilinos-piro12 - embedded nonlinear analysis package - runtime files
 libtrilinos-pliris-dev - Trilinos dense solvers package - development files
 libtrilinos-pliris12 - Trilinos dense solvers package - runtime files
 libtrilinos-rol-dev - rapid optimization library - development files
 libtrilinos-rol12 - rapid optimization library - runtime files
 libtrilinos-rtop-dev - reductions/transformation operators - development files
 libtrilinos-rtop12 - reductions/transformation operators - runtime files
 libtrilinos-rythmos-dev - Trilinos transient integrator - development files
 libtrilinos-rythmos12 - Trilinos transient integrator - runtime files
 libtrilinos-sacado-dev - automatic differentiation for C++ applications - development file
 libtrilinos-sacado12 - automatic differentiation for C++ applications - runtime files
 libtrilinos-shards-dev - interoperability tools for PDE solving - development files
 libtrilinos-shards12 - interoperability tools for PDE solving - runtime files
 libtrilinos-shylu-dev - solving sparse linear systems - development files
 libtrilinos-shylu12 - solving sparse linear systems - runtime files
 libtrilinos-stokhos-dev - Trilinos uncertainty quantification package - development files
 libtrilinos-stokhos12 - Trilinos uncertainty quantification package - runtime files
 libtrilinos-stratimikos-dev - wrappers for linear solvers and preconditioners - development fil
 libtrilinos-stratimikos12 - wrappers for linear solvers and preconditioners - runtime files
 libtrilinos-teko-dev - block preconditioners - development files
 libtrilinos-teko12 - block preconditioners - runtime files
 libtrilinos-teuchos-dev - common tools for Trilinos - development files
 libtrilinos-teuchos12 - common tools for Trilinos - runtime files
 libtrilinos-thyra-dev - interoperability layer for numerical software - development files
 libtrilinos-thyra12 - interoperability layer for numerical software - runtime files
 libtrilinos-tpetra-dev - templated numerical linear algebra package - development files
 libtrilinos-tpetra12 - templated numerical linear algebra package - runtime files
 libtrilinos-trilinoscouplings-dev - combining Trilinos packages - development files
 libtrilinos-trilinoscouplings12 - combining Trilinos packages - runtime files
 libtrilinos-triutils-dev - utilities for Trilinos - development files
 libtrilinos-triutils12 - utilities for Trilinos - runtime files
 libtrilinos-xpetra-dev - conversion between Epetra and Teuchos objects - development files
 libtrilinos-xpetra12 - conversion between Epetra and Teuchos objects - runtime files
 libtrilinos-zoltan-dev - parallel dynamic load balancing - development files
 libtrilinos-zoltan12 - parallel dynamic load balancing - runtime files
 libtrilinos-zoltan2-12 - Trilinos next generation load balancing package - runtime files
 libtrilinos-zoltan2-dev - Trilinos next generation load balancing package - development fil
 trilinos-all-dev - object-oriented framework for large-scale problems - development
 trilinos-dev - object-oriented framework for large-scale problems - development
 trilinos-doc - object-oriented framework for large-scale problems - documentatio
Closes: 835406
Changes:
 trilinos (12.6.4-1) unstable; urgency=medium
 .
   * New upstream release
   * Add myself to uploaders
   * Enable Kokkos build on 32-bit architectures (Closes: #835406)
Checksums-Sha1:
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 7c07023aab30f12022b5bd78d826fe952c5df62e 83680634 trilinos_12.6.4.orig.tar.bz2
 486714a5274c23df66674a51e3e40905dd3100cd 18628 trilinos_12.6.4-1.debian.tar.xz
Checksums-Sha256:
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 7a770eb3d88239b22798a2f15f6fdfcee0d1afd0ba6eb1af60cbb31b72247186 18628 trilinos_12.6.4-1.debian.tar.xz
Files:
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Message #56 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Graham Inggs <ginggs@debian.org>

To: 835406@bugs.debian.org, "Aaron M. Ucko" <amu@alum.mit.edu>, Nico Schlömer <nico.schloemer@gmail.com>

Subject: trilinos: FTBFS on 32-bit architectures

Date: Wed, 7 Dec 2016 09:19:20 +0200

Control: tags -1 patch
Control: merge -1 836130

I've had another look at this after uploading 12.10.1.
Upstream have added the following in
packages/kokkos/core/src/Kokkos_Core_fwd.hpp:

//----------------------------------------------------------------------------
// Have assumed a 64bit build (8byte pointers) throughout the code base.

static_assert( sizeof(void*) == 8
             , "Kokkos assumes 64-bit build; i.e., 8-byte pointers" );

//----------------------------------------------------------------------------

They have also added more code that assumes long and long long are the
same size, e.g. in
packages/kokkos/core/src/impl/Kokkos_Atomic_Decrement.hpp

Nico and I discussed building Trilinos without the Kokkos package on
32-bit architectures (and even tested this) however we also lose the
Amesos2, Ifpack2, Phalanx, Stokhos, Teko, Tpetra and Zoltan2 packages
which depend on Kokkos.  Nico felt that half of a Trilinos package on
32-bit architectures would not be useful.

I'll leave this open as a wishlist bug in case any of the i386 porters
can help. ;)

Message #67 received at 835406@bugs.debian.org (full text, mbox, reply):

From: ucko@debian.org (Aaron M. Ucko)

To: Graham Inggs <ginggs@debian.org>

Cc: <835406@bugs.debian.org>, Nico Schlömer <nico.schloemer@gmail.com>

Subject: Re: trilinos: FTBFS on 32-bit architectures

Date: Wed, 07 Dec 2016 10:31:03 -0500

Graham Inggs <ginggs@debian.org> writes:

> // Have assumed a 64bit build (8byte pointers) throughout the code base.

That's annoying, though at least they clearly acknowledge it up front.

> Amesos2, Ifpack2, Phalanx, Stokhos, Teko, Tpetra and Zoltan2 packages
> which depend on Kokkos.  Nico felt that half of a Trilinos package on
> 32-bit architectures would not be useful.

Fair enough, particularly given that the only reverse dependency I see
is deal.ii, which relies on several indirectly affected packages.

Thanks for looking into the problem!

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu

Message #72 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Graham Inggs <ginggs@debian.org>

To: "Aaron M. Ucko" <ucko@debian.org>

Cc: 835406@bugs.debian.org, Nico Schlömer <nico.schloemer@gmail.com>

Subject: Re: trilinos: FTBFS on 32-bit architectures

Date: Fri, 9 Dec 2016 09:15:05 +0200

[Message part 1 (text/plain, inline)]

Attached is an updated version of kokkos-32-bit.patch against upstream 12.10.1.
It turns out that once the templates were fixed, the overloaded
function declarations were not needed.

Builds and test of Kokkos-only and all Trilinos packages on 64-bit
architectures are not affected.

On 32-bit architectures that have an 8-byte compare-and-swap
implementation (e.g. armhf and i386), a Kokkos-only build is
successful, but 1 out of the 21 unit tests,
KokkosCore_UnitTest_Serial_MPI_1, fails.
KokkosCore_UnitTest_Serial_MPI_1 includes 60 tests and of these only 4
fail with errors like:

Value of: result[i].value[j]
  Actual: 5.00005e+09
Expected: (ScalarType) correct
Which is: 7.05083e+08

A build of all Trilinos packages fails with a few errors similar to
the following:

packages/tpetra/core/test/Distributor/createfromsendsandrecvs.cpp:315:61:
error: conversion from ‘Teuchos::ArrayView<const unsigned int>’ to
non-scalar type ‘Teuchos::ArrayView<const long unsigned int>’
requested
   ArrayView<const long unsigned int> c = dist.getLengthsFrom();


For a Kokkos-only build, which saves a huge amount of time (thanks
Nico!), make the following changes to debian/rules:

--- a/debian/rules
+++ b/debian/rules
@@ -93,8 +93,9 @@
    -DTrilinos_INSTALL_INCLUDE_DIR:PATH=include/trilinos/ \
    -DTrilinos_USE_GNUINSTALLDIRS:BOOL=ON \
    -DTrilinos_ENABLE_DEVELOPMENT_MODE:BOOL=OFF \
-   -DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
-   -DTrilinos_ENABLE_SECONDARY_TESTED_CODE:BOOL=ON \
+   -DTrilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \
+   -DTrilinos_ENABLE_SECONDARY_TESTED_CODE:BOOL=OFF \
+   -DTrilinos_ENABLE_Kokkos:BOOL=ON \
    -DTrilinos_ASSERT_MISSING_PACKAGES:BOOL=OFF \
    -DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON \
    -DTrilinos_ENABLE_CTrilinos:BOOL=OFF \

[kokkos-32-bit.patch (application/x-empty, attachment)]

Message #77 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Nico Schlömer <nico.schloemer@gmail.com>

To: Graham Inggs <ginggs@debian.org>, 835406@bugs.debian.org, "Aaron M. Ucko" <ucko@debian.org>

Subject: Re: Bug#835406: trilinos: FTBFS on 32-bit architectures

Date: Fri, 09 Dec 2016 07:49:50 +0000

[Message part 1 (text/plain, inline)]

The patch looks really simple. Great! Do you think it'd be worthwhile
updating the PR [1] (or opening a new one)? Perhaps the kokkos devs can
figure out why the remaining tests are failing.

Cheers,
Nico

[1] https://github.com/kokkos/kokkos/pull/410

On Fri, Dec 9, 2016 at 8:18 AM Graham Inggs <ginggs@debian.org> wrote:

> Attached is an updated version of kokkos-32-bit.patch against upstream
> 12.10.1.
> It turns out that once the templates were fixed, the overloaded
> function declarations were not needed.
>
> Builds and test of Kokkos-only and all Trilinos packages on 64-bit
> architectures are not affected.
>
> On 32-bit architectures that have an 8-byte compare-and-swap
> implementation (e.g. armhf and i386), a Kokkos-only build is
> successful, but 1 out of the 21 unit tests,
> KokkosCore_UnitTest_Serial_MPI_1, fails.
> KokkosCore_UnitTest_Serial_MPI_1 includes 60 tests and of these only 4
> fail with errors like:
>
> Value of: result[i].value[j]
>   Actual: 5.00005e+09
> Expected: (ScalarType) correct
> Which is: 7.05083e+08
>
> A build of all Trilinos packages fails with a few errors similar to
> the following:
>
> packages/tpetra/core/test/Distributor/createfromsendsandrecvs.cpp:315:61:
> error: conversion from ‘Teuchos::ArrayView<const unsigned int>’ to
> non-scalar type ‘Teuchos::ArrayView<const long unsigned int>’
> requested
>    ArrayView<const long unsigned int> c = dist.getLengthsFrom();
>
>
> For a Kokkos-only build, which saves a huge amount of time (thanks
> Nico!), make the following changes to debian/rules:
>
> --- a/debian/rules
> +++ b/debian/rules
> @@ -93,8 +93,9 @@
>     -DTrilinos_INSTALL_INCLUDE_DIR:PATH=include/trilinos/ \
>     -DTrilinos_USE_GNUINSTALLDIRS:BOOL=ON \
>     -DTrilinos_ENABLE_DEVELOPMENT_MODE:BOOL=OFF \
> -   -DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
> -   -DTrilinos_ENABLE_SECONDARY_TESTED_CODE:BOOL=ON \
> +   -DTrilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \
> +   -DTrilinos_ENABLE_SECONDARY_TESTED_CODE:BOOL=OFF \
> +   -DTrilinos_ENABLE_Kokkos:BOOL=ON \
>     -DTrilinos_ASSERT_MISSING_PACKAGES:BOOL=OFF \
>     -DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON \
>     -DTrilinos_ENABLE_CTrilinos:BOOL=OFF \
>

[Message part 2 (text/html, inline)]

Message #82 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Graham Inggs <ginggs@debian.org>

To: Nico Schlömer <nico.schloemer@gmail.com>

Cc: 835406@bugs.debian.org, "Aaron M. Ucko" <ucko@debian.org>

Subject: Re: Bug#835406: trilinos: FTBFS on 32-bit architectures

Date: Fri, 9 Dec 2016 12:21:48 +0200

On 9 December 2016 at 09:49, Nico Schlömer <nico.schloemer@gmail.com> wrote:
> The patch looks really simple. Great! Do you think it'd be worthwhile
> updating the PR [1] (or opening a new one)? Perhaps the kokkos devs can
> figure out why the remaining tests are failing.

No harm in trying, I guess. :)
Please update the PR, but I suggest leaving out the static_asserts,
i.e. don't include the changes to Kokkos_Core_fwd.hpp and
Kokkos_TaskQueue.hpp.
Also, I think the changes to Kokkos_Macros.hpp from
kokkos-disable-asm.patch should go in a separate PR.  Hopefully they
can merge that right away.

Message #87 received at 835406@bugs.debian.org (full text, mbox, reply):

From: Nico Schlömer <nico.schloemer@gmail.com>

To: Graham Inggs <ginggs@debian.org>

Cc: 835406@bugs.debian.org, "Aaron M. Ucko" <ucko@debian.org>

Subject: Re: Bug#835406: trilinos: FTBFS on 32-bit architectures

Date: Fri, 09 Dec 2016 12:28:38 +0000

[Message part 1 (text/plain, inline)]

Done [1] and done [2]. Graham, you might want to subscribe to those PRs.

Cheers,
Nico

[1] https://github.com/kokkos/kokkos/pull/57
<https://github.com/kokkos/kokkos/pull/576>5
[2] https://github.com/kokkos/kokkos/pull/576

On Fri, Dec 9, 2016 at 11:22 AM Graham Inggs <ginggs@debian.org> wrote:

> On 9 December 2016 at 09:49, Nico Schlömer <nico.schloemer@gmail.com>
> wrote:
> > The patch looks really simple. Great! Do you think it'd be worthwhile
> > updating the PR [1] (or opening a new one)? Perhaps the kokkos devs can
> > figure out why the remaining tests are failing.
>
> No harm in trying, I guess. :)
> Please update the PR, but I suggest leaving out the static_asserts,
> i.e. don't include the changes to Kokkos_Core_fwd.hpp and
> Kokkos_TaskQueue.hpp.
> Also, I think the changes to Kokkos_Macros.hpp from
> kokkos-disable-asm.patch should go in a separate PR.  Hopefully they
> can merge that right away.
>

[Message part 2 (text/html, inline)]

Message #92 received at 835406-done@bugs.debian.org (full text, mbox, reply):

From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>

To: 650794-done@bugs.debian.org,835406-done@bugs.debian.org,

Cc: trilinos@packages.debian.org, trilinos@packages.qa.debian.org

Subject: Bug#847431: Removed package(s) from unstable

Date: Sat, 10 Dec 2016 17:52:20 +0000

Version: 12.10.1-1+rm

Dear submitter,

as the package trilinos has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/847431

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmaster@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)

Message #107 received at 835406-close@bugs.debian.org (full text, mbox, reply):

From: Graham Inggs <ginggs@debian.org>

To: 835406-close@bugs.debian.org

Subject: Bug#835406: fixed in trilinos 12.12.1-8

Date: Fri, 23 Aug 2019 16:08:06 +0000

Source: trilinos
Source-Version: 12.12.1-8

We believe that the bug you reported is fixed in the latest version of
trilinos, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 835406@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Graham Inggs <ginggs@debian.org> (supplier of updated trilinos package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 23 Aug 2019 14:24:44 +0000
Source: trilinos
Architecture: source
Version: 12.12.1-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Graham Inggs <ginggs@debian.org>
Closes: 835406 848770 868523 881873 935269
Changes:
 trilinos (12.12.1-8) unstable; urgency=medium
 .
   * Switch to debhelper 12
   * Set Rules-Requires-Root: no
   * Update debian/watch
   * Restrict build architectures to those that are successful
     (Closes: #835406, #881873, #935269)
   * Fix Phalanx tests with GCC 7.2 and re-enable them (Closes: #868523)
   * Re-enable Isorropia, ShyLUCore and Teko tests (Closes: #848770)
   * Bump Standards-Version to 4.4.0, no changes
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 d7d474c99c598db1ff9ebeaaf09e288cc0292eb5 19884 trilinos_12.12.1-8.debian.tar.xz
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 b620e77a206cffade486c64870dd4a92e21f0232cc47ce03f28913a5a6cd8d5c 11805 trilinos_12.12.1-8.dsc
 61a183c168ce0819e5c37b5c503bff47510cd08fc998d480666a8f0e62f3a078 19884 trilinos_12.12.1-8.debian.tar.xz
Files:
 f07a8dffa6fb750ac601b0a547eca7ae 11805 science optional trilinos_12.12.1-8.dsc
 3921fcfdb3cf716bac9465c7cb834e3b 19884 science optional trilinos_12.12.1-8.debian.tar.xz

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