Debian Bug report logs - #828884
gridengine: FTBFS on x32: This Java instance does not support a 64-bit JVM.

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Package: src:gridengine; Maintainer for src:gridengine is Debian HPC Team <debian-hpc@lists.debian.org>;

Reported by: "Aaron M. Ucko" <amu@alum.mit.edu>

Date: Tue, 28 Jun 2016 19:06:44 UTC

Severity: important

Tags: confirmed

Found in version gridengine/8.1.8+dfsg-7

Fixed in version gridengine/8.1.9+dfsg-2

Done: Afif Elghraoui <afif@debian.org>

Bug is archived. No further changes may be made.

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Report forwarded to debian-bugs-dist@lists.debian.org, ucko@debian.org, Debian Grid Engine Maintainers <pkg-gridengine-devel@lists.alioth.debian.org>:
Bug#828884; Package src:gridengine. (Tue, 28 Jun 2016 19:06:48 GMT) (full text, mbox, link).


Acknowledgement sent to "Aaron M. Ucko" <amu@alum.mit.edu>:
New Bug report received and forwarded. Copy sent to ucko@debian.org, Debian Grid Engine Maintainers <pkg-gridengine-devel@lists.alioth.debian.org>. (Tue, 28 Jun 2016 19:06:48 GMT) (full text, mbox, link).


Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: "Aaron M. Ucko" <amu@alum.mit.edu>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: gridengine: FTBFS on x32: This Java instance does not support a 64-bit JVM.
Date: Tue, 28 Jun 2016 15:04:09 -0400
Source: gridengine
Version: 8.1.8+dfsg-7
Severity: important
Justification: fails to build from source

The x32 build of gridengine failed, apparently due to confusion with amd64:

     [java] jni.init:
     [java]      [echo] env.AIMK_TARGET_BITS=${env.AIMK_TARGET_BITS}
     [java]      [echo] env.aimk_buildarch=${env.aimk_buildarch}
     [java]      [echo] sge.arch=lx-amd64
     [java]      [echo] sge.src.arch=LINUXAMD64
     [java]      [echo] sge.src.targetbits=${env.AIMK_TARGET_BITS}
     [java]      [echo] aimk.debug=-debug
     [java]      [echo] aimk.options=
     [java]      [echo] sge.jvmargs = -Djava.library.path=/«BUILDDIR»/gridengine-8.1.8+dfsg/source/LINUXAMD64 -d64
     [java] 
     [java] gensrc:
     [java]      [echo] java.library.path: /usr/java/packages/lib/x32:/usr/lib/x86_64-linux-gnux32/jni:/lib/x86_64-linux-gnux32:/usr/lib/x86_64-linux-gnux32:/usr/lib/jni:/lib:/usr/lib
     [java]      [java] Error: This Java instance does not support a 64-bit JVM.
     [java]      [java] Please install the desired version.

Could you please take a look?

Thanks!



Added tag(s) confirmed. Request was from Afif Elghraoui <afif@debian.org> to control@bugs.debian.org. (Sat, 02 Jul 2016 21:51:09 GMT) (full text, mbox, link).


Added tag(s) pending. Request was from Afif Elghraoui <afif@debian.org> to control@bugs.debian.org. (Sun, 11 Sep 2016 06:51:04 GMT) (full text, mbox, link).


Message sent on to "Aaron M. Ucko" <amu@alum.mit.edu>:
Bug#828884. (Sun, 11 Sep 2016 06:51:26 GMT) (full text, mbox, link).


Message #12 received at 828884-submitter@bugs.debian.org (full text, mbox, reply):

From: Afif Elghraoui <afif@debian.org>
To: 828884-submitter@bugs.debian.org
Subject: Bug#828884 marked as pending
Date: Sun, 11 Sep 2016 06:48:56 +0000
tag 828884 pending
thanks

Hello,

Bug #828884 reported by you has been fixed in the Git repository. You can
see the changelog below, and you can check the diff of the fix at:

    http://git.debian.org/?p=pkg-gridengine/pkg-gridengine.git;a=commitdiff;h=fac9f5d

---
commit fac9f5db03b2a0b3272d10bffb4b14e12fab29db
Author: Afif Elghraoui <afif@debian.org>
Date:   Sat Sep 10 23:48:37 2016 -0700

    releasing package gridengine version 8.1.9+dfsg-2

diff --git a/debian/changelog b/debian/changelog
index fd4d9a1..a2e646f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,17 @@
+gridengine (8.1.9+dfsg-2) unstable; urgency=low
+
+  * Backport upstream patch to remove deprecated BSD union wait
+    (Closes: #833995)
+  * Don't force -m32/-m64 for native compilation (Closes: #828877)
+  * Set JAVA_HOME variable in d/rules (Closes: #828874)
+  * Set proper Java paths for arm64, mips64el, sparc64, and alpha
+  * Add support for x32 (Closes: #828884)
+  * d/rules; miscellaneous cleanups
+    - Override dh_fixperms-indep rather than applying a manual check
+    - debian/rules: don't create unnecessary build-stamp
+
+ -- Afif Elghraoui <afif@debian.org>  Sat, 10 Sep 2016 23:00:59 -0700
+
 gridengine (8.1.9+dfsg-1) unstable; urgency=medium
 
   * Readability improvements:  d/watch, d/rules



Reply sent to Afif Elghraoui <afif@debian.org>:
You have taken responsibility. (Sun, 11 Sep 2016 07:06:11 GMT) (full text, mbox, link).


Notification sent to "Aaron M. Ucko" <amu@alum.mit.edu>:
Bug acknowledged by developer. (Sun, 11 Sep 2016 07:06:11 GMT) (full text, mbox, link).


Message #17 received at 828884-close@bugs.debian.org (full text, mbox, reply):

From: Afif Elghraoui <afif@debian.org>
To: 828884-close@bugs.debian.org
Subject: Bug#828884: fixed in gridengine 8.1.9+dfsg-2
Date: Sun, 11 Sep 2016 07:03:35 +0000
Source: gridengine
Source-Version: 8.1.9+dfsg-2

We believe that the bug you reported is fixed in the latest version of
gridengine, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 828884@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Afif Elghraoui <afif@debian.org> (supplier of updated gridengine package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 10 Sep 2016 23:00:59 -0700
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master gridengine-exec gridengine-dev gridengine-drmaa1.0 libdrmaa1.0-java libdrmaa1.0-java-doc gridengine-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-2
Distribution: unstable
Urgency: low
Maintainer: Debian Grid Engine Maintainers <pkg-gridengine-devel@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <afif@debian.org>
Description:
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-dev - Distributed resource management - development files
 gridengine-drmaa-dev - Distributed resource management Application API library - develop
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa1.0-java - Distributed resource management Application API library - Java bi
 libdrmaa1.0-java-doc - Distributed resource management Application API library - Java bi
 libdrmaa1.0-ruby - Distributed resource management Application API library - Ruby bi
Closes: 828874 828877 828884 833995
Changes:
 gridengine (8.1.9+dfsg-2) unstable; urgency=low
 .
   * Backport upstream patch to remove deprecated BSD union wait
     (Closes: #833995)
   * Don't force -m32/-m64 for native compilation (Closes: #828877)
   * Set JAVA_HOME variable in d/rules (Closes: #828874)
   * Set proper Java paths for arm64, mips64el, sparc64, and alpha
   * Add support for x32 (Closes: #828884)
   * d/rules; miscellaneous cleanups
     - Override dh_fixperms-indep rather than applying a manual check
     - debian/rules: don't create unnecessary build-stamp
Checksums-Sha1:
 46c8acd062eb6966ac3c0f2e95ba609f2b11d024 3070 gridengine_8.1.9+dfsg-2.dsc
 3fd9e7fa26b54d14f0b78db633810377f8076727 42332 gridengine_8.1.9+dfsg-2.debian.tar.xz
Checksums-Sha256:
 31dc5cc3663671cebcdc9d3b6a0332aabee473da6118355aa5817d9b14ab9f93 3070 gridengine_8.1.9+dfsg-2.dsc
 ffa7ef96ec93d0c8fbac5233a0ab69b3025296339c9961b2575532d826bb5438 42332 gridengine_8.1.9+dfsg-2.debian.tar.xz
Files:
 a697d1cfae96350904778881b41860a0 3070 utils optional gridengine_8.1.9+dfsg-2.dsc
 275e9be49d571a4b6c2d1d2933284602 42332 utils optional gridengine_8.1.9+dfsg-2.debian.tar.xz

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Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Wed, 19 Oct 2016 07:36:35 GMT) (full text, mbox, link).


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