Debian Bug report logs - #806493
cython: please make the output reproducible

version graph

Package: src:cython; Maintainer for src:cython is Debian Python Team <team+python@tracker.debian.org>;

Reported by: Chris Lamb <lamby@debian.org>

Date: Fri, 27 Nov 2015 21:48:02 UTC

Severity: wishlist

Tags: patch

Found in versions cython/0.23.2+git16-ga8fbae1-1, cython/0.23.4+git4-g7eed8d8-1

Fixed in version cython/0.24.1-1

Done: Yaroslav Halchenko <debian@onerussian.com>

Bug is archived. No further changes may be made.

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View this report as an mbox folder, status mbox, maintainer mbox


Report forwarded to debian-bugs-dist@lists.debian.org, reproducible-builds@lists.alioth.debian.org, Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>:
Bug#806493; Package src:cython. (Fri, 27 Nov 2015 21:48:05 GMT) (full text, mbox, link).


Acknowledgement sent to Chris Lamb <lamby@debian.org>:
New Bug report received and forwarded. Copy sent to reproducible-builds@lists.alioth.debian.org, Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>. (Fri, 27 Nov 2015 21:48:05 GMT) (full text, mbox, link).


Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Chris Lamb <lamby@debian.org>
To: submit@bugs.debian.org
Subject: cython: please make the output reproducible
Date: Fri, 27 Nov 2015 23:45:45 +0200
[Message part 1 (text/plain, inline)]
Source: cython
Version: 0.23.2+git16-ga8fbae1-1
Severity: wishlist
Tags: patch
User: reproducible-builds@lists.alioth.debian.org
Usertags: randomness toolchain
X-Debbugs-Cc: reproducible-builds@lists.alioth.debian.org

Hi,

Whilst working on the "reproducible builds" effort [0], we noticed that
cython generates output that is not reproducible.

The attached patch removes non-deterministic dict ordering from the
output. Once applied, some packages that use cython can be built
reproducibly using our reproducible toolchain (eg. astroscrappy).

 [0] https://wiki.debian.org/ReproducibleBuilds


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org / chris-lamb.co.uk
       `-
[cython.diff.txt (text/plain, attachment)]

Added tag(s) pending. Request was from yoh@users.alioth.debian.org to control@bugs.debian.org. (Fri, 19 Feb 2016 18:24:08 GMT) (full text, mbox, link).


Reply sent to Yaroslav Halchenko <debian@onerussian.com>:
You have taken responsibility. (Fri, 19 Feb 2016 18:39:09 GMT) (full text, mbox, link).


Notification sent to Chris Lamb <lamby@debian.org>:
Bug acknowledged by developer. (Fri, 19 Feb 2016 18:39:09 GMT) (full text, mbox, link).


Message #12 received at 806493-close@bugs.debian.org (full text, mbox, reply):

From: Yaroslav Halchenko <debian@onerussian.com>
To: 806493-close@bugs.debian.org
Subject: Bug#806493: fixed in cython 0.23.4+git4-g7eed8d8-1
Date: Fri, 19 Feb 2016 18:34:16 +0000
Source: cython
Source-Version: 0.23.4+git4-g7eed8d8-1

We believe that the bug you reported is fixed in the latest version of
cython, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 806493@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Yaroslav Halchenko <debian@onerussian.com> (supplier of updated cython package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 19 Feb 2016 10:12:47 -0500
Source: cython
Binary: cython cython-dbg cython3 cython3-dbg cython-doc
Architecture: source amd64 all
Version: 0.23.4+git4-g7eed8d8-1
Distribution: unstable
Urgency: medium
Maintainer: Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>
Changed-By: Yaroslav Halchenko <debian@onerussian.com>
Description:
 cython     - C-Extensions for Python
 cython-dbg - C-Extensions for Python - debug build
 cython-doc - C-Extensions for Python - documentation
 cython3    - C-Extensions for Python 3
 cython3-dbg - C-Extensions for Python 3 - debug build
Closes: 806493
Changes:
 cython (0.23.4+git4-g7eed8d8-1) unstable; urgency=medium
 .
   * Fresh upstream post bugfix release snapshot
   * patches/deb-reproducible.patch - deterministically sort items for
     reproducible execution.  Thanks Chris Lamb (Closes: #806493)
   * patches/guess_longness.patch - dropped since this release includes it
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Information forwarded to debian-bugs-dist@lists.debian.org, Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>:
Bug#806493; Package src:cython. (Sun, 21 Feb 2016 21:48:04 GMT) (full text, mbox, link).


Acknowledgement sent to Jérémy Bobbio <lunar@debian.org>:
Extra info received and forwarded to list. Copy sent to Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>. (Sun, 21 Feb 2016 21:48:05 GMT) (full text, mbox, link).


Message #17 received at 806493@bugs.debian.org (full text, mbox, reply):

From: Jérémy Bobbio <lunar@debian.org>
To: Chris Lamb <lamby@debian.org>
Cc: 806493@bugs.debian.org
Subject: Re: Bug#806493 closed by Yaroslav Halchenko <debian@onerussian.com> (Bug#806493: fixed in cython 0.23.4+git4-g7eed8d8-1)
Date: Sun, 21 Feb 2016 22:45:25 +0100
[Message part 1 (text/plain, inline)]
Debian Bug Tracking System:
> This is an automatic notification regarding your Bug report
> which was filed against the src:cython package:
> 
> #806493: cython: please make the output reproducible
> 
> It has been closed by Yaroslav Halchenko <debian@onerussian.com>.

Sadly, this doesn't seem to fix all issues:
https://tests.reproducible-builds.org/dbd/unstable/amd64/astroscrappy_1.0.3-6.diffoscope.html

-- 
Lunar                                .''`. 
lunar@debian.org                    : :Ⓐ  :  # apt-get install anarchism
                                    `. `'` 
                                      `-   
[signature.asc (application/pgp-signature, inline)]

Information forwarded to debian-bugs-dist@lists.debian.org, Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>:
Bug#806493; Package src:cython. (Fri, 26 Feb 2016 22:24:04 GMT) (full text, mbox, link).


Acknowledgement sent to Chris Lamb <lamby@debian.org>:
Extra info received and forwarded to list. Copy sent to Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>. (Fri, 26 Feb 2016 22:24:04 GMT) (full text, mbox, link).


Message #22 received at 806493@bugs.debian.org (full text, mbox, reply):

From: Chris Lamb <lamby@debian.org>
To: Jérémy Bobbio <lunar@debian.org>
Cc: 806493@bugs.debian.org, Yaroslav Halchenko <debian@onerussian.com>
Subject: Re: Bug#806493 closed by Yaroslav Halchenko <debian@onerussian.com> (Bug#806493: fixed in cython 0.23.4+git4-g7eed8d8-1)
Date: Fri, 26 Feb 2016 22:20:33 +0000
[Message part 1 (text/plain, inline)]
found 806493 0.23.4+git4-g7eed8d8-1
thanks

> Sadly, this doesn't seem to fix all issues:
> https://tests.reproducible-builds.org/dbd/unstable/amd64/astroscrappy_1.0.3-6.diffoscope.html

Patch attached to fix this issue.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org / chris-lamb.co.uk
       `-
[cython.diff.txt (text/plain, attachment)]

Marked as found in versions cython/0.23.4+git4-g7eed8d8-1; no longer marked as fixed in versions cython/0.23.4+git4-g7eed8d8-1 and reopened. Request was from Chris Lamb <lamby@debian.org> to control@bugs.debian.org. (Fri, 26 Feb 2016 22:24:07 GMT) (full text, mbox, link).


Reply sent to Yaroslav Halchenko <debian@onerussian.com>:
You have taken responsibility. (Tue, 02 Aug 2016 04:21:04 GMT) (full text, mbox, link).


Notification sent to Chris Lamb <lamby@debian.org>:
Bug acknowledged by developer. (Tue, 02 Aug 2016 04:21:06 GMT) (full text, mbox, link).


Message #29 received at 806493-close@bugs.debian.org (full text, mbox, reply):

From: Yaroslav Halchenko <debian@onerussian.com>
To: 806493-close@bugs.debian.org
Subject: Bug#806493: fixed in cython 0.24.1-1
Date: Tue, 02 Aug 2016 04:19:56 +0000
Source: cython
Source-Version: 0.24.1-1

We believe that the bug you reported is fixed in the latest version of
cython, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 806493@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Yaroslav Halchenko <debian@onerussian.com> (supplier of updated cython package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 01 Aug 2016 18:21:43 -0400
Source: cython
Binary: cython cython-dbg cython3 cython3-dbg cython-doc
Architecture: source amd64 all
Version: 0.24.1-1
Distribution: unstable
Urgency: medium
Maintainer: Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>
Changed-By: Yaroslav Halchenko <debian@onerussian.com>
Description:
 cython     - C-Extensions for Python
 cython-dbg - C-Extensions for Python - debug build
 cython-doc - C-Extensions for Python - documentation
 cython3    - C-Extensions for Python 3
 cython3-dbg - C-Extensions for Python 3 - debug build
Closes: 806493 820183 830645
Changes:
 cython (0.24.1-1) unstable; urgency=medium
 .
   [ Alexis Bienvenüe <pado@passoire.fr> ]
   * Fix copyright year in documentation for reproducible build
     (Closes: #820183)
 .
   [ Yaroslav Halchenko ]
   * Fresh upstream release (Closes: #830645)
     - addresses additional reproducible build issues (Closes: #806493)
       please open NEW bugreport if additional issues persist
   * debian/watch
     - monitor pypi for release tarballs
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Information forwarded to debian-bugs-dist@lists.debian.org, Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>:
Bug#806493; Package src:cython. (Mon, 17 Oct 2016 09:33:04 GMT) (full text, mbox, link).


Acknowledgement sent to FedEx International Next Flight <stephen.feldman@tomhageneiendom.no>:
Extra info received and forwarded to list. Copy sent to Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>. (Mon, 17 Oct 2016 09:33:04 GMT) (full text, mbox, link).


Message #34 received at 806493@bugs.debian.org (full text, mbox, reply):

From: FedEx International Next Flight <stephen.feldman@tomhageneiendom.no>
To: <806493@bugs.debian.org>
Subject: Courier was unable to deliver the parcel, ID00428147
Date: Mon, 17 Oct 2016 11:29:53 +0200
[Message part 1 (text/plain, inline)]
Dear Customer,

We could not deliver your parcel.
Shipment Label is attached to this email.

Thanks and best regards,
Stephen Feldman,
FedEx Station Agent.

[Malware Alert Text.txt (application/octet-stream, attachment)]

Information forwarded to debian-bugs-dist@lists.debian.org, Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>:
Bug#806493; Package src:cython. (Sat, 05 Nov 2016 20:57:06 GMT) (full text, mbox, link).


Acknowledgement sent to "FedEx International MailService" <miguel.frank@mayaatthelago.com>:
Extra info received and forwarded to list. Copy sent to Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>. (Sat, 05 Nov 2016 20:57:06 GMT) (full text, mbox, link).


Message #39 received at 806493@bugs.debian.org (full text, mbox, reply):

From: "FedEx International MailService" <miguel.frank@mayaatthelago.com>
To: 806493@bugs.debian.org
Subject: Shipment delivery problem #00000836000
Date: Sat, 5 Nov 2016 20:53:15 +0000
[Message part 1 (text/plain, inline)]
Dear Customer,

Courier was unable to deliver the parcel to you.
Delivery Label is attached to this email.

Yours faithfully,
Miguel Frank,
Sr. Delivery Agent.

[Delivery_Notification_00000836000.zip (application/zip, attachment)]

Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Mon, 05 Dec 2016 11:39:30 GMT) (full text, mbox, link).


Bug unarchived. Request was from Don Armstrong <don@debian.org> to control@bugs.debian.org. (Wed, 07 Dec 2016 01:44:12 GMT) (full text, mbox, link).


Information forwarded to debian-bugs-dist@lists.debian.org, Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>:
Bug#806493; Package src:cython. (Fri, 06 Jan 2017 06:03:03 GMT) (full text, mbox, link).


Acknowledgement sent to "FedEx Support" <ramon.werner@novadine.com>:
Extra info received and forwarded to list. Copy sent to Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>. (Fri, 06 Jan 2017 06:03:03 GMT) (full text, mbox, link).


Message #48 received at 806493@bugs.debian.org (full text, mbox, reply):

From: "FedEx Support" <ramon.werner@novadine.com>
To: 806493@bugs.debian.org
Subject: Parcel #00475190 shipment problem, please review
Date: Fri, 6 Jan 2017 05:59:06 +0000
[Message part 1 (text/plain, inline)]
Dear Customer,

Your item has arrived at the FedEx Post Office at January 02, but the courier was unable to deliver parcel to you.

Please check delivery label attached!

With many thanks,
Ramon Werner,
Mail Delivery Agent.

[Delivery-Receipt-00475190.zip (application/zip, attachment)]

Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Fri, 03 Feb 2017 07:28:33 GMT) (full text, mbox, link).


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