Debian Bug report logs - #715107
libptscotch-5.1: ships libs in /usr/lib/scotch_*/ instead of /usr/lib/scotch-*/

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Package: libptscotch-5.1; Maintainer for libptscotch-5.1 is Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>; Source for libptscotch-5.1 is src:scotch (PTS, buildd, popcon).

Reported by: David Steele <steele@debian.org>

Date: Sat, 6 Jul 2013 05:29:51 UTC

Severity: serious

Tags: patch

Found in version scotch/5.1.12b.dfsg-2

Fixed in version scotch/5.1.12b.dfsg-2.1

Done: Andreas Beckmann <anbe@debian.org>

Bug is archived. No further changes may be made.

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Report forwarded to Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>:
Bug#715107; Package libptscotch-dev. (Sat, 06 Jul 2013 05:29:57 GMT) (full text, mbox, link).

Acknowledgement sent to David Steele <dsteele@gmail.com>:
New Bug report received and forwarded. Copy sent to Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>. (Sat, 06 Jul 2013 05:29:57 GMT) (full text, mbox, link).

Message #5 received at maintonly@bugs.debian.org (full text, mbox, reply):

From: David Steele <dsteele@gmail.com>
To: maintonly@bugs.debian.org
Subject: Broken library symlink detected in libptscotch-dev
Date: Sat, 06 Jul 2013 05:01:15 +0000
Package: libptscotch-dev
Version: 5.1.12b.dfsg-2
Severity: serious
User: debian-qa@lists.debian.org
Usertags: piuparts, broken-symlink, broken-symlink-shared-library

Hi,

During a test with piuparts, I noticed your package is
responsible for the presence of broken symlinks involving
a shared library. Such failures may indicate a significant
problem with the package.

Usually this is caused by a missing Depends. It may also be
triggered if a Recommended or reverse dependency package
owning the symlink target file is not yet installed. This type
of failure mode needs to be eliminated so that other symlink
problems become more visible. In this case, the problem can be
resolved by creating a trigger for the target file. See the
dpkg triggers documentation[1] and an example on the net[2] for
implementation details.

This is being filed as Serious because it represents a violation
of Policy. Section 8 states "Packages containing shared
libraries must be constructed with a little care to make sure
that the shared library is always available".

A link to the log containing the indicated broken symlinks can
be found on piuparts.debian.org[3]. Search for "Warn: Broken
Symlinks" to see the failure point. A log showing the broken
symlink as an error is appended.

The log contains the following broken symlinks:

  /usr/lib/scotch-int32/libptscotchparmetis.so
    -> libptscotchparmetis-5.1.so
  /usr/lib/scotch-int32/libptscotch.so
    -> libptscotch-5.1.so
  /usr/lib/scotch-int32/libptesmumps.so
    -> libptesmumps-5.1.so
  /usr/lib/scotch-int32/libptscotcherr.so
    -> libptscotcherr-5.1.so
  /usr/lib/scotch-int32/libptscotcherrexit.so
    -> libptscotcherrexit-5.1.so
  /usr/lib/scotch-int64/libptscotchparmetis.so
    -> libptscotchparmetis-5.1.so
  /usr/lib/scotch-int64/libptscotch.so
    -> libptscotch-5.1.so
  /usr/lib/scotch-int64/libptesmumps.so
    -> libptesmumps-5.1.so
  /usr/lib/scotch-int64/libptscotcherr.so
    -> libptscotcherr-5.1.so
  /usr/lib/scotch-int64/libptscotcherrexit.so
    -> libptscotcherrexit-5.1.so
  /usr/lib/scotch-long/libptscotchparmetis.so
    -> libptscotchparmetis-5.1.so
  /usr/lib/scotch-long/libptscotch.so
    -> libptscotch-5.1.so
  /usr/lib/scotch-long/libptesmumps.so
    -> libptesmumps-5.1.so
  /usr/lib/scotch-long/libptscotcherr.so
    -> libptscotcherr-5.1.so
  /usr/lib/scotch-long/libptscotcherrexit.so
    -> libptscotcherrexit-5.1.so


[1] - file:///usr/share/doc/dpkg-dev/triggers.txt.gz
[2] - http://www.seanius.net/blog/2009/09/dpkg-triggers-howto/
[3] - http://piuparts.debian.org/sid/broken_symlinks_issue.html


----------

Start: 2013-07-05 21:22:18 EST

Package: libptscotch-dev
Source: scotch
Version: 5.1.12b.dfsg-2
Installed-Size: 25001
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Architecture: amd64
Depends: libptscotch-5.1 (= 5.1.12b.dfsg-2), libscotch-dev (= 5.1.12b.dfsg-2), mpi-default-dev, zlib1g-dev
Description: MPI programs and libraries for graph, mesh and hypergraph partitioning
Homepage: http://www.labri.fr/perso/pelegrin/scotch/
Description-md5: 0eafb053278f9be78b326b70f40b1fd4
Tag: devel::library, role::devel-lib
Section: libdevel
Priority: extra
Filename: pool/main/s/scotch/libptscotch-dev_5.1.12b.dfsg-2_amd64.deb
Size: 6607682
MD5sum: 9174d368f4f5cfb40057aeb4253abd99
SHA1: 5075917300f70e1b8fab2bb1d0b6e5ffaca61443
SHA256: ab92fe817268c0a9e0816ee012e8b0ebf41297223a7ab6c37189b365b7a0858d

Executing: sudo piuparts --scriptsdir /etc/piuparts/scripts --skip-logrotatefiles-test --warn-on-others --fail-on-broken-symlinks --mirror http://127.0.0.1/debian --tmpdir /var/tmp --arch amd64 -b /var/cache/piuparts/basetgz/sid.tar.gz -d sid --no-upgrade-test --apt libptscotch-dev=5.1.12b.dfsg-2
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 0.54~201306172307~0.53-14-ge8900a0 starting up.
0m0.0s INFO: Command line arguments: '/usr/sbin/piuparts' '--scriptsdir' '/etc/piuparts/scripts' '--skip-logrotatefiles-test' '--warn-on-others' '--fail-on-broken-symlinks' '--mirror' 'http://127.0.0.1/debian' '--tmpdir' '/var/tmp' '--arch' 'amd64' '-b' '/var/cache/piuparts/basetgz/sid.tar.gz' '-d' 'sid' '--no-upgrade-test' '--apt' 'libptscotch-dev=5.1.12b.dfsg-2'
0m0.0s INFO: Running on: Linux debian-testing 3.9-1-amd64 #1 SMP Debian 3.9.8-1 x86_64
0m0.0s DEBUG: Created temporary directory /var/tmp/tmprqEfdN
0m0.0s DEBUG: Unpacking /var/cache/piuparts/basetgz/sid.tar.gz into /var/tmp/tmprqEfdN
0m0.0s DEBUG: Starting command: ['tar', '-C', '/var/tmp/tmprqEfdN', '-zxf', '/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.4s DEBUG: Command ok: ['tar', '-C', '/var/tmp/tmprqEfdN', '-zxf', '/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'mount', '-t', 'proc', 'proc', '/proc']
0m1.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'mount', '-t', 'proc', 'proc', '/proc']
0m1.4s DEBUG: sources.list:
  deb http://127.0.0.1/debian sid main
  deb http://127.0.0.1/debian sid contrib
  deb http://127.0.0.1/debian sid non-free
0m1.4s DEBUG: Created policy-rc.d and chmodded it.
0m1.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'update']
0m6.7s DUMP: 
  Get:1 http://127.0.0.1 sid InRelease [205 kB]
  Get:2 http://127.0.0.1 sid/main amd64 Packages [6398 kB]
  Get:3 http://127.0.0.1 sid/contrib amd64 Packages [48.5 kB]
  Get:4 http://127.0.0.1 sid/non-free amd64 Packages [84.6 kB]
  Get:5 http://127.0.0.1 sid/contrib Translation-en [39.9 kB]
  Get:6 http://127.0.0.1 sid/main Translation-en [4246 kB]
  Get:7 http://127.0.0.1 sid/non-free Translation-en [72.7 kB]
  Fetched 11.1 MB in 3s (2900 kB/s)
  Reading package lists...
0m6.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'update']
0m6.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-yf', 'dist-upgrade']
0m8.2s DUMP: 
  Reading package lists...
  Building dependency tree...
  The following packages will be upgraded:
    apt libapt-pkg4.12 libc-bin libc6 multiarch-support
  5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
  Need to get 8332 kB of archives.
  After this operation, 132 kB of additional disk space will be used.
  Get:1 http://127.0.0.1/debian/ sid/main libc-bin amd64 2.17-7 [1298 kB]
  Get:2 http://127.0.0.1/debian/ sid/main libc6 amd64 2.17-7 [4624 kB]
  Get:3 http://127.0.0.1/debian/ sid/main libapt-pkg4.12 amd64 0.9.9 [926 kB]
  Get:4 http://127.0.0.1/debian/ sid/main apt amd64 0.9.9 [1323 kB]
  Get:5 http://127.0.0.1/debian/ sid/main multiarch-support amd64 2.17-7 [160 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 8332 kB in 0s (40.8 MB/s)
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace libc-bin 2.17-6 (using .../libc-bin_2.17-7_amd64.deb) ...
  Unpacking replacement libc-bin ...
  Setting up libc-bin (2.17-7) ...
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace libc6:amd64 2.17-6 (using .../libc6_2.17-7_amd64.deb) ...
  Unpacking replacement libc6:amd64 ...
  Setting up libc6:amd64 (2.17-7) ...
  Processing triggers for libc-bin ...
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace libapt-pkg4.12:amd64 0.9.8.2 (using .../libapt-pkg4.12_0.9.9_amd64.deb) ...
  Unpacking replacement libapt-pkg4.12:amd64 ...
  Setting up libapt-pkg4.12:amd64 (0.9.9) ...
  Processing triggers for libc-bin ...
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace apt 0.9.8.2 (using .../archives/apt_0.9.9_amd64.deb) ...
  Unpacking replacement apt ...
  Setting up apt (0.9.9) ...
  gpg: key B98321F9: "Squeeze Stable Release Key <debian-release@lists.debian.org>" not changed
  gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) <ftpmaster@debian.org>" not changed
  gpg: key 65FFB764: "Wheezy Stable Release Key <debian-release@lists.debian.org>" not changed
  gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy) <ftpmaster@debian.org>" not changed
  gpg: Total number processed: 4
  gpg:              unchanged: 4
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace multiarch-support 2.17-6 (using .../multiarch-support_2.17-7_amd64.deb) ...
  Unpacking replacement multiarch-support ...
  Setting up multiarch-support (2.17-7) ...
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-yf', 'dist-upgrade']
0m8.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /var/tmp/tmprqEfdN/tmp/scripts/
0m8.2s INFO: Running scripts post_setup
0m8.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_experimental']
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_experimental']
0m8.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_forbid_home']
0m8.2s DUMP: 
  Disabling /home
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_forbid_home']
0m8.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_squeeze-backports']
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_squeeze-backports']
0m8.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'clean']
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'clean']
0m9.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '--get-selections', '*']
0m9.4s DUMP: 
  apt						install
  base-files					install
  base-passwd					install
  bash						install
  bsdutils					install
  coreutils					install
  dash						install
  debconf						install
  debconf-i18n					install
  debian-archive-keyring				install
  debianutils					install
  diffutils					install
  dpkg						install
  e2fslibs:amd64					install
  e2fsprogs					install
  eatmydata					install
  findutils					install
  gcc-4.7-base:amd64				install
  gcc-4.8-base:amd64				install
  gnupg						install
  gpgv						install
  grep						install
  gzip						install
  hostname					install
  initscripts					install
  insserv						install
  libacl1:amd64					install
  libapt-pkg4.12:amd64				install
  libattr1:amd64					install
  libblkid1:amd64					install
  libbz2-1.0:amd64				install
  libc-bin					install
  libc6:amd64					install
  libcap2:amd64					install
  libcomerr2:amd64				install
  libdb5.1:amd64					install
  libgcc1:amd64					install
  liblocale-gettext-perl				install
  liblzma5:amd64					install
  libmount1					install
  libncurses5:amd64				install
  libpam-modules:amd64				install
  libpam-modules-bin				install
  libpam-runtime					install
  libpam0g:amd64					install
  libpcre3:amd64					install
  libreadline6:amd64				install
  libselinux1:amd64				install
  libsemanage-common				install
  libsemanage1:amd64				install
  libsepol1:amd64					install
  libslang2:amd64					install
  libss2:amd64					install
  libstdc++6:amd64				install
  libtext-charwidth-perl				install
  libtext-iconv-perl				install
  libtext-wrapi18n-perl				install
  libtinfo5:amd64					install
  libusb-0.1-4:amd64				install
  libustr-1.0-1:amd64				install
  libuuid1:amd64					install
  login						install
  lsb-base					install
  mawk						install
  mount						install
  multiarch-support				install
  ncurses-base					install
  ncurses-bin					install
  passwd						install
  perl-base					install
  readline-common					install
  sed						install
  sensible-utils					install
  sysv-rc						install
  sysvinit					install
  sysvinit-utils					install
  tar						install
  tzdata						install
  util-linux					install
  zlib1g:amd64					install
0m9.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '--get-selections', '*']
0m9.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg-divert', '--list']
0m9.4s DUMP: 
  diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash
  diversion of /bin/sh to /bin/sh.distrib by dash
0m9.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg-divert', '--list']
0m9.4s INFO: Starting install/purge
0m9.4s INFO: apt-cache does not know about any of the requested packages
0m9.4s INFO: Running scripts pre_test
0m9.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_test_root_password']
0m9.4s DUMP: 
  Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully
0m9.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_test_root_password']
0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m10.7s DEBUG: No broken symlinks as far as we can find.
0m10.7s INFO: Running scripts pre_install
0m10.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_database-server']
0m10.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_database-server']
0m10.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_exceptions']
0m10.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_exceptions']
0m10.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'show', 'libptscotch-dev']
0m12.1s DUMP: 
  Package: libptscotch-dev
  Source: scotch
  Version: 5.1.12b.dfsg-2
  Installed-Size: 25001
  Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libptscotch-5.1 (= 5.1.12b.dfsg-2), libscotch-dev (= 5.1.12b.dfsg-2), mpi-default-dev, zlib1g-dev
  Description-en: MPI programs and libraries for graph, mesh and hypergraph partitioning
   Headers and libraries package for PT-SCOTCH, the MPI version of scotch, which
   is a set of programs and libraries which implement the static mapping and
   sparse matrix reordering algorithms developed within the SCOTCH project.
  Description-md5: 0eafb053278f9be78b326b70f40b1fd4
  Homepage: http://www.labri.fr/perso/pelegrin/scotch/
  Description-md5: 0eafb053278f9be78b326b70f40b1fd4
  Tag: devel::library, role::devel-lib
  Section: libdevel
  Priority: extra
  Filename: pool/main/s/scotch/libptscotch-dev_5.1.12b.dfsg-2_amd64.deb
  Size: 6607682
  MD5sum: 9174d368f4f5cfb40057aeb4253abd99
  SHA1: 5075917300f70e1b8fab2bb1d0b6e5ffaca61443
  SHA256: ab92fe817268c0a9e0816ee012e8b0ebf41297223a7ab6c37189b365b7a0858d
0m12.1s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'show', 'libptscotch-dev']
0m12.1s DEBUG: Starting command: ['dpkg-deb', '-b', '--nocheck', '/var/tmp/tmpRfFpH_/piuparts-depends-dummy']
0m12.1s DUMP: 
  dpkg-deb: warning: not checking contents of control area
  dpkg-deb: building an unknown package in '/var/tmp/tmpRfFpH_/piuparts-depends-dummy.deb'.
0m12.1s DEBUG: Command ok: ['dpkg-deb', '-b', '--nocheck', '/var/tmp/tmpRfFpH_/piuparts-depends-dummy']
0m12.1s DEBUG: Copying /var/tmp/tmpRfFpH_/piuparts-depends-dummy.deb to /var/tmp/tmprqEfdN/tmp
0m12.1s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb']
0m12.1s DUMP: 
  Selecting previously unselected package piuparts-depends-dummy.
  (Reading database ... 6639 files and directories currently installed.)
  Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ...
  dpkg: dependency problems prevent configuration of piuparts-depends-dummy:
   piuparts-depends-dummy depends on libptscotch-5.1 (= 5.1.12b.dfsg-2); however:
    Package libptscotch-5.1 is not installed.
   piuparts-depends-dummy depends on libscotch-dev (= 5.1.12b.dfsg-2); however:
    Package libscotch-dev is not installed.
   piuparts-depends-dummy depends on mpi-default-dev; however:
    Package mpi-default-dev is not installed.
   piuparts-depends-dummy depends on zlib1g-dev; however:
    Package zlib1g-dev is not installed.
  
  dpkg: error processing piuparts-depends-dummy (--install):
   dependency problems - leaving unconfigured
  Errors were encountered while processing:
   piuparts-depends-dummy
0m12.1s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb']
0m12.1s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-yf', 'install']
0m14.3s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Correcting dependencies... Done
  The following extra packages will be installed:
    adduser libc-dev-bin libc6-dev libgfortran3 libibverbs-dev libibverbs1
    libnuma1 libopenmpi-dev libopenmpi1.3 libptscotch-5.1 libquadmath0
    libscotch-5.1 libscotch-dev libtorque2 linux-libc-dev mpi-default-dev
    openmpi-common zlib1g-dev
  Suggested packages:
    perl-modules glibc-doc
  Recommended packages:
    manpages-dev gcc c-compiler
  The following NEW packages will be installed:
    adduser libc-dev-bin libc6-dev libgfortran3 libibverbs-dev libibverbs1
    libnuma1 libopenmpi-dev libopenmpi1.3 libptscotch-5.1 libquadmath0
    libscotch-5.1 libscotch-dev libtorque2 linux-libc-dev mpi-default-dev
    openmpi-common zlib1g-dev
  0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
  1 not fully installed or removed.
  Need to get 15.8 MB of archives.
  After this operation, 56.9 MB of additional disk space will be used.
  Get:1 http://127.0.0.1/debian/ sid/main libquadmath0 amd64 4.8.1-5 [138 kB]
  Get:2 http://127.0.0.1/debian/ sid/main libgfortran3 amd64 4.8.1-5 [345 kB]
  Get:3 http://127.0.0.1/debian/ sid/main adduser all 3.113+nmu3 [264 kB]
  Get:4 http://127.0.0.1/debian/ sid/main libibverbs1 amd64 1.1.7-1 [35.4 kB]
  Get:5 http://127.0.0.1/debian/ sid/main libnuma1 amd64 2.0.8-3 [34.5 kB]
  Get:6 http://127.0.0.1/debian/ sid/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB]
  Get:7 http://127.0.0.1/debian/ sid/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB]
  Get:8 http://127.0.0.1/debian/ sid/main libscotch-5.1 amd64 5.1.12b.dfsg-2 [808 kB]
  Get:9 http://127.0.0.1/debian/ sid/main libptscotch-5.1 amd64 5.1.12b.dfsg-2 [1299 kB]
  Get:10 http://127.0.0.1/debian/ sid/main openmpi-common all 1.4.5-1 [101 kB]
  Get:11 http://127.0.0.1/debian/ sid/main libibverbs-dev amd64 1.1.7-1 [86.1 kB]
  Get:12 http://127.0.0.1/debian/ sid/main libopenmpi-dev amd64 1.4.5-1 [2778 kB]
  Get:13 http://127.0.0.1/debian/ sid/main mpi-default-dev amd64 1.0.1 [3604 B]
  Get:14 http://127.0.0.1/debian/ sid/main libc-dev-bin amd64 2.17-7 [233 kB]
  Get:15 http://127.0.0.1/debian/ sid/main linux-libc-dev amd64 3.9.8-1 [854 kB]
  Get:16 http://127.0.0.1/debian/ sid/main libc6-dev amd64 2.17-7 [3140 kB]
  Get:17 http://127.0.0.1/debian/ sid/main zlib1g-dev amd64 1:1.2.8.dfsg-1 [217 kB]
  Get:18 http://127.0.0.1/debian/ sid/main libscotch-dev amd64 5.1.12b.dfsg-2 [3885 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 15.8 MB in 0s (28.5 MB/s)
  Selecting previously unselected package libquadmath0:amd64.
  (Reading database ... 6639 files and directories currently installed.)
  Unpacking libquadmath0:amd64 (from .../libquadmath0_4.8.1-5_amd64.deb) ...
  Selecting previously unselected package libgfortran3:amd64.
  Unpacking libgfortran3:amd64 (from .../libgfortran3_4.8.1-5_amd64.deb) ...
  Selecting previously unselected package adduser.
  Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ...
  Selecting previously unselected package libibverbs1.
  Unpacking libibverbs1 (from .../libibverbs1_1.1.7-1_amd64.deb) ...
  Selecting previously unselected package libnuma1.
  Unpacking libnuma1 (from .../libnuma1_2.0.8-3_amd64.deb) ...
  Selecting previously unselected package libtorque2.
  Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1_amd64.deb) ...
  Selecting previously unselected package libopenmpi1.3.
  Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ...
  Selecting previously unselected package libscotch-5.1.
  Unpacking libscotch-5.1 (from .../libscotch-5.1_5.1.12b.dfsg-2_amd64.deb) ...
  Selecting previously unselected package libptscotch-5.1.
  Unpacking libptscotch-5.1 (from .../libptscotch-5.1_5.1.12b.dfsg-2_amd64.deb) ...
  Selecting previously unselected package openmpi-common.
  Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ...
  Selecting previously unselected package libibverbs-dev.
  Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.7-1_amd64.deb) ...
  Selecting previously unselected package libopenmpi-dev.
  Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.5-1_amd64.deb) ...
  Selecting previously unselected package mpi-default-dev.
  Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_amd64.deb) ...
  Selecting previously unselected package libc-dev-bin.
  Unpacking libc-dev-bin (from .../libc-dev-bin_2.17-7_amd64.deb) ...
  Selecting previously unselected package linux-libc-dev:amd64.
  Unpacking linux-libc-dev:amd64 (from .../linux-libc-dev_3.9.8-1_amd64.deb) ...
  Selecting previously unselected package libc6-dev:amd64.
  Unpacking libc6-dev:amd64 (from .../libc6-dev_2.17-7_amd64.deb) ...
  Selecting previously unselected package zlib1g-dev:amd64.
  Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_amd64.deb) ...
  Selecting previously unselected package libscotch-dev.
  Unpacking libscotch-dev (from .../libscotch-dev_5.1.12b.dfsg-2_amd64.deb) ...
  Setting up libquadmath0:amd64 (4.8.1-5) ...
  Setting up libgfortran3:amd64 (4.8.1-5) ...
  Setting up adduser (3.113+nmu3) ...
  Setting up libibverbs1 (1.1.7-1) ...
  Setting up libnuma1 (2.0.8-3) ...
  Setting up libtorque2 (2.4.16+dfsg-1) ...
  Setting up libopenmpi1.3 (1.4.5-1) ...
  Setting up libscotch-5.1 (5.1.12b.dfsg-2) ...
  Setting up libptscotch-5.1 (5.1.12b.dfsg-2) ...
  Setting up openmpi-common (1.4.5-1) ...
  Setting up libibverbs-dev (1.1.7-1) ...
  Setting up libopenmpi-dev (1.4.5-1) ...
  update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
  Setting up mpi-default-dev (1.0.1) ...
  Setting up libc-dev-bin (2.17-7) ...
  Setting up linux-libc-dev:amd64 (3.9.8-1) ...
  Setting up libc6-dev:amd64 (2.17-7) ...
  Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1) ...
  Setting up libscotch-dev (5.1.12b.dfsg-2) ...
  Setting up piuparts-depends-dummy (0.invalid.0) ...
  Processing triggers for libc-bin ...
0m14.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-yf', 'install']
0m14.3s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok
0m14.3s DEBUG: Removing /var/tmp/tmprqEfdN/tmp/piuparts-depends-dummy.deb
0m14.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m14.3s DUMP: 
  (Reading database ... 8971 files and directories currently installed.)
  Removing piuparts-depends-dummy ...
0m14.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m14.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'clean']
0m14.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'clean']
0m15.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m15.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m17.0s DEBUG: No broken symlinks as far as we can find.
0m17.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'policy']
0m18.3s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://127.0.0.1/debian/ sid/non-free Translation-en
   500 http://127.0.0.1/debian/ sid/main Translation-en
   500 http://127.0.0.1/debian/ sid/contrib Translation-en
   500 http://127.0.0.1/debian/ sid/non-free amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=non-free
       origin 127.0.0.1
   500 http://127.0.0.1/debian/ sid/contrib amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=contrib
       origin 127.0.0.1
   500 http://127.0.0.1/debian/ sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main
       origin 127.0.0.1
  Pinned packages:
0m18.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'policy']
0m18.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'policy', 'libptscotch-dev']
0m18.3s DUMP: 
  libptscotch-dev:
    Installed: (none)
    Candidate: 5.1.12b.dfsg-2
    Version table:
       5.1.12b.dfsg-2 0
          500 http://127.0.0.1/debian/ sid/main amd64 Packages
0m18.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'policy', 'libptscotch-dev']
0m18.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-y', 'install', 'libptscotch-dev=5.1.12b.dfsg-2']
0m19.2s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  The following NEW packages will be installed:
    libptscotch-dev
  0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
  Need to get 6608 kB of archives.
  After this operation, 25.6 MB of additional disk space will be used.
  Get:1 http://127.0.0.1/debian/ sid/main libptscotch-dev amd64 5.1.12b.dfsg-2 [6608 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 6608 kB in 0s (32.8 MB/s)
  Selecting previously unselected package libptscotch-dev.
  (Reading database ... 8971 files and directories currently installed.)
  Unpacking libptscotch-dev (from .../libptscotch-dev_5.1.12b.dfsg-2_amd64.deb) ...
  Setting up libptscotch-dev (5.1.12b.dfsg-2) ...
0m19.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-y', 'install', 'libptscotch-dev=5.1.12b.dfsg-2']
0m19.2s INFO: Running scripts post_install
0m19.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m19.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m21.0s ERROR: FAIL: Broken symlinks:
  /usr/lib/scotch-int32/libptscotchparmetis.so -> libptscotchparmetis-5.1.so
  /usr/lib/scotch-int32/libptscotch.so -> libptscotch-5.1.so
  /usr/lib/scotch-int32/libptesmumps.so -> libptesmumps-5.1.so
  /usr/lib/scotch-int32/libptscotcherr.so -> libptscotcherr-5.1.so
  /usr/lib/scotch-int32/libptscotcherrexit.so -> libptscotcherrexit-5.1.so
  /usr/lib/scotch-int64/libptscotchparmetis.so -> libptscotchparmetis-5.1.so
  /usr/lib/scotch-int64/libptscotch.so -> libptscotch-5.1.so
  /usr/lib/scotch-int64/libptesmumps.so -> libptesmumps-5.1.so
  /usr/lib/scotch-int64/libptscotcherr.so -> libptscotcherr-5.1.so
  /usr/lib/scotch-int64/libptscotcherrexit.so -> libptscotcherrexit-5.1.so
  /usr/lib/scotch-long/libptscotchparmetis.so -> libptscotchparmetis-5.1.so
  /usr/lib/scotch-long/libptscotch.so -> libptscotch-5.1.so
  /usr/lib/scotch-long/libptesmumps.so -> libptesmumps-5.1.so
  /usr/lib/scotch-long/libptscotcherr.so -> libptscotcherr-5.1.so
  /usr/lib/scotch-long/libptscotcherrexit.so -> libptscotcherrexit-5.1.so
0m21.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'umount', '/proc']
0m21.6s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'umount', '/proc']
0m21.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/var/tmp/tmprqEfdN']
0m21.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/var/tmp/tmprqEfdN']
0m21.7s DEBUG: Removed directory tree at /var/tmp/tmprqEfdN
0m21.7s ERROR: piuparts run ends.

ret=1
End: 2013-07-05 21:22:40 EST

Severity set to 'normal' from 'serious' Request was from Dave Steele <dsteele@gmail.com> to control@bugs.debian.org. (Sat, 06 Jul 2013 21:57:40 GMT) (full text, mbox, link).

Changed Bug submitter to 'David Steele <steele@debian.org>' from 'David Steele <dsteele@gmail.com>'. Request was from David Steele <steele@debian.org> to control@bugs.debian.org. (Thu, 25 Aug 2016 00:48:13 GMT) (full text, mbox, link).

Information forwarded to debian-bugs-dist@lists.debian.org, Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>:
Bug#715107; Package libptscotch-dev. (Tue, 14 Mar 2017 18:12:03 GMT) (full text, mbox, link).

Acknowledgement sent to Andreas Beckmann <anbe@debian.org>:
Extra info received and forwarded to list. Copy sent to Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>. (Tue, 14 Mar 2017 18:12:03 GMT) (full text, mbox, link).

Message #14 received at 715107@bugs.debian.org (full text, mbox, reply):

From: Andreas Beckmann <anbe@debian.org>
To: Debian Bug Tracking System <715107@bugs.debian.org>
Subject: Re: Broken library symlink detected in libptscotch-dev
Date: Tue, 14 Mar 2017 19:09:05 +0100
Followup-For: Bug #715107
Control: severity -1 serious
Control: reassign -1 libptscotch-5.1 5.1.12b.dfsg-2
Control: retitle -1 libptscotch-5.1: ships libs in /usr/lib/scotch_*/ instead of /usr/lib/scotch-*/

libscotch-5.1   ships /usr/lib/scotch-*/libscotch-5.1.so etc.
libscotch-dev   ships /usr/lib/scotch-*/libscotch.so -> libscotch-5.1.so etc.
libptscotch-dev ships /usr/lib/scotch-*/libptscotch.so -> libptscotch-5.1.so (BROKEN) etc.
libptscotch-5.1 ships /usr/lib/scotch_*/libptscotch-5.1.so etc.

That '_' instead of '-' looks inconsistent.


Andreas

Severity set to 'serious' from 'normal' Request was from Andreas Beckmann <anbe@debian.org> to 715107-submit@bugs.debian.org. (Tue, 14 Mar 2017 18:12:03 GMT) (full text, mbox, link).

Bug reassigned from package 'libptscotch-dev' to 'libptscotch-5.1'. Request was from Andreas Beckmann <anbe@debian.org> to 715107-submit@bugs.debian.org. (Tue, 14 Mar 2017 18:12:04 GMT) (full text, mbox, link).

No longer marked as found in versions scotch/5.1.12b.dfsg-2. Request was from Andreas Beckmann <anbe@debian.org> to 715107-submit@bugs.debian.org. (Tue, 14 Mar 2017 18:12:04 GMT) (full text, mbox, link).

Marked as found in versions scotch/5.1.12b.dfsg-2. Request was from Andreas Beckmann <anbe@debian.org> to 715107-submit@bugs.debian.org. (Tue, 14 Mar 2017 18:12:05 GMT) (full text, mbox, link).

Changed Bug title to 'libptscotch-5.1: ships libs in /usr/lib/scotch_*/ instead of /usr/lib/scotch-*/' from 'Broken library symlink detected in libptscotch-dev'. Request was from Andreas Beckmann <anbe@debian.org> to 715107-submit@bugs.debian.org. (Tue, 14 Mar 2017 18:12:05 GMT) (full text, mbox, link).

Information forwarded to debian-bugs-dist@lists.debian.org, Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>:
Bug#715107; Package libptscotch-5.1. (Fri, 17 Mar 2017 22:33:06 GMT) (full text, mbox, link).

Acknowledgement sent to Andreas Beckmann <anbe@debian.org>:
Extra info received and forwarded to list. Copy sent to Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>. (Fri, 17 Mar 2017 22:33:06 GMT) (full text, mbox, link).

Message #29 received at 715107@bugs.debian.org (full text, mbox, reply):

From: Andreas Beckmann <anbe@debian.org>
To: Debian Bug Tracking System <715107@bugs.debian.org>
Subject: Re: libptscotch-5.1: ships libs in /usr/lib/scotch_*/ instead of /usr/lib/scotch-*/
Date: Fri, 17 Mar 2017 23:31:46 +0100
[Message part 1 (text/plain, inline)]
Followup-For: Bug #715107
Control: tag -1 patch pending

Hi,

I prepared a patch fixing several issues in scotch and will upload it to
DELAYED/5. Please let me know if I should delay it longer or reschedule.

Andreas

[scotch_5.1.12b.dfsg-2.1.dsc.diff (text/x-diff, attachment)]

Added tag(s) pending and patch. Request was from Andreas Beckmann <anbe@debian.org> to 715107-submit@bugs.debian.org. (Fri, 17 Mar 2017 22:33:06 GMT) (full text, mbox, link).

Reply sent to Andreas Beckmann <anbe@debian.org>:
You have taken responsibility. (Wed, 22 Mar 2017 23:06:08 GMT) (full text, mbox, link).

Notification sent to David Steele <steele@debian.org>:
Bug acknowledged by developer. (Wed, 22 Mar 2017 23:06:08 GMT) (full text, mbox, link).

Message #36 received at 715107-close@bugs.debian.org (full text, mbox, reply):

From: Andreas Beckmann <anbe@debian.org>
To: 715107-close@bugs.debian.org
Subject: Bug#715107: fixed in scotch 5.1.12b.dfsg-2.1
Date: Wed, 22 Mar 2017 23:04:20 +0000
Source: scotch
Source-Version: 5.1.12b.dfsg-2.1

We believe that the bug you reported is fixed in the latest version of
scotch, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 715107@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Beckmann <anbe@debian.org> (supplier of updated scotch package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 17 Mar 2017 23:23:06 +0100
Source: scotch
Binary: scotch ptscotch libscotch-dev libptscotch-dev scotch-dbg ptscotch-dbg libscotch-dbg libptscotch-dbg libscotchmetis-dev libscotchparmetis-dev libscotch-5.1 libptscotch-5.1
Architecture: source
Version: 5.1.12b.dfsg-2.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Beckmann <anbe@debian.org>
Description:
 libptscotch-5.1 - MPI programs and libraries for graph, mesh and hypergraph partiti
 libptscotch-dbg - MPI programs and libraries for graph, mesh and hypergraph partiti
 libptscotch-dev - MPI programs and libraries for graph, mesh and hypergraph partiti
 libscotch-5.1 - programs and libraries for graph, mesh and hypergraph partitionin
 libscotch-dbg - programs and libraries for graph, mesh and hypergraph partitionin
 libscotch-dev - programs and libraries for graph, mesh and hypergraph partitionin
 libscotchmetis-dev - programs and libraries for graph, mesh and hypergraph partitionin
 libscotchparmetis-dev - programs and libraries for graph, mesh and hypergraph partitionin
 ptscotch   - MPI programs and libraries for graph, mesh and hypergraph partiti
 ptscotch-dbg - MPI programs and libraries for graph, mesh and hypergraph partiti
 scotch     - programs and libraries for graph, mesh and hypergraph partitionin
 scotch-dbg - programs and libraries for graph, mesh and hypergraph partitionin
Closes: 715107 715112 787997 816109 835019
Changes:
 scotch (5.1.12b.dfsg-2.1) unstable; urgency=medium
 .
   * Non-maintainer upload.
   * Drop DMUA.
   * Remove Christophe Prud'homme from Uploaders.  (Closes: #835019)
   * libptscotch-5.1: Fix library installation path.  (Closes: #715107)
   * libscotchmetis-dev: Fix libmetis.* -> libscotchmetis.* links.
   * libscotchparmetis-dev: Fix libparmetis.* -> libptscotchparmetis.* links.
     (Closes: #715112, #816109)
   * Make package build reproducibly, thanks to Dhole.  (Closes: #787997)
Checksums-Sha1:
 efb911c277f29f58d2e69f24bd2821a7116b2460 2739 scotch_5.1.12b.dfsg-2.1.dsc
 2e7d6ddbaf6bfdd8ca71133cc2a1a6012921fed7 21880 scotch_5.1.12b.dfsg-2.1.debian.tar.xz
 642b7313754e3d6e82a4acf7702b7f2ad06f6de2 5275 scotch_5.1.12b.dfsg-2.1_source.buildinfo
Checksums-Sha256:
 f4eba6df8238983448c261b94c36f8ee736b29a848cbffe4842132e81b0253f0 2739 scotch_5.1.12b.dfsg-2.1.dsc
 6b43ded362bd66f031306934747a7d93b278a3b0392a63ab57be00664134adcc 21880 scotch_5.1.12b.dfsg-2.1.debian.tar.xz
 c215aeb14c250e38063a6e1154f7bd15a74463d16b57e0496bb6b4171a017694 5275 scotch_5.1.12b.dfsg-2.1_source.buildinfo
Files:
 dfde5ea58116e8ac177635cf787cbff8 2739 math extra scotch_5.1.12b.dfsg-2.1.dsc
 0219b4a0766c2a89b2790086bcce6d77 21880 math extra scotch_5.1.12b.dfsg-2.1.debian.tar.xz
 2dd1fc56a84c7fcd3a86b6873d0c7b07 5275 math extra scotch_5.1.12b.dfsg-2.1_source.buildinfo

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Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Sun, 16 Jul 2017 07:27:31 GMT) (full text, mbox, link).

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Debian bug tracking system administrator <owner@bugs.debian.org>. Last modified: Sun Oct 22 22:23:17 2017; Machine Name: beach

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