Debian Bug report logs - #673182
RFP: pscan-tfbs -- finds overrepresented transcription factor binding sites

Package: wnpp; Maintainer for wnpp is wnpp@debian.org;

Reported by: Steffen Moeller <steffen_moeller@gmx.de>

Date: Wed, 16 May 2012 17:51:02 UTC

Severity: wishlist

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Report forwarded to debian-bugs-dist@lists.debian.org, debian-devel@lists.debian.org, wnpp@debian.org:
Bug#673182; Package wnpp. (Wed, 16 May 2012 17:51:04 GMT) Full text and rfc822 format available.

Acknowledgement sent to Steffen Moeller <steffen_moeller@gmx.de>:
New Bug report received and forwarded. Copy sent to debian-devel@lists.debian.org, wnpp@debian.org. (Wed, 16 May 2012 17:51:04 GMT) Full text and rfc822 format available.

Message #5 received at submit@bugs.debian.org (full text, mbox):

From: Steffen Moeller <steffen_moeller@gmx.de>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: pscan -- finds overrepresented transcription factor binding sites
Date: Wed, 16 May 2012 19:48:46 +0200
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moeller@gmx.de>

* Package name    : pscan
  Version         : 1.2.1
* URL             : http://159.149.109.9/pscan/
* License         : unclear
  Programming Lang: C++
  Description     : finds overrepresented transcription factor binding sites

This packages takes a motif database of transcription factor binding sites 
(TFBS) and expects a list of genes that are found co-regulated. It then points to
those TFBS that seem statistically most unlikely to be observed by chance.


The package already lives at
Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/pscan

Cheers,

Steffen




Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, Steffen Moeller <steffen_moeller@gmx.de>:
Bug#673182; Package wnpp. (Wed, 16 May 2012 22:54:03 GMT) Full text and rfc822 format available.

Message #8 received at 673182@bugs.debian.org (full text, mbox):

From: Charles Plessy <plessy@debian.org>
To: debian-med@lists.debian.org, debian-devel@lists.debian.org
Subject: Re: Bug#673182: ITP: pscan -- finds overrepresented transcription factor binding sites
Date: Thu, 17 May 2012 06:57:29 +0900
Le Wed, May 16, 2012 at 07:48:46PM +0200, Steffen Moeller a écrit :
> Package: wnpp
> Severity: wishlist
> Owner: Steffen Moeller <steffen_moeller@gmx.de>
> 
> * Package name    : pscan
>   Version         : 1.2.1
> * URL             : http://159.149.109.9/pscan/
> * License         : unclear
>   Programming Lang: C++
>   Description     : finds overrepresented transcription factor binding sites
> 
> This packages takes a motif database of transcription factor binding sites 
> (TFBS) and expects a list of genes that are found co-regulated. It then points to
> those TFBS that seem statistically most unlikely to be observed by chance.
> 

Hello everybody,

we have a problem... EMBOSS also distributes a program called pscan, as well as
the "pscan" package itself (Format string security checker for C files).

Cheers,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


-- 
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with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org
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Changed Bug title to 'ITP: pscan-tfbs -- finds overrepresented transcription' from 'ITP: pscan -- finds overrepresented transcription factor binding sites' Request was from bartm@knars.be to control@bugs.debian.org. (Thu, 07 Jun 2012 12:57:20 GMT) Full text and rfc822 format available.

Changed Bug title to 'ITP: pscan-tfbs -- finds overrepresented transcription factor binding sites' from 'ITP: pscan-tfbs -- finds overrepresented transcription' Request was from Bart Martens <bartm@debian.org> to control@bugs.debian.org. (Thu, 07 Jun 2012 16:27:07 GMT) Full text and rfc822 format available.

Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, Steffen Moeller <steffen_moeller@gmx.de>:
Bug#673182; Package wnpp. (Fri, 16 Aug 2013 17:06:42 GMT) Full text and rfc822 format available.

Acknowledgement sent to Lucas Nussbaum <lucas@debian.org>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org, Steffen Moeller <steffen_moeller@gmx.de>. (Fri, 16 Aug 2013 17:06:42 GMT) Full text and rfc822 format available.

Message #17 received at 673182@bugs.debian.org (full text, mbox):

From: Lucas Nussbaum <lucas@debian.org>
To: 673182@bugs.debian.org
Cc: control@bugs.debian.org
Subject: pscan-tfbs: changing back from ITP to RFP
Date: Fri, 16 Aug 2013 18:58:55 +0200
retitle 673182 RFP: pscan-tfbs -- finds overrepresented transcription factor binding sites
noowner 673182
tag 673182 - pending
thanks

Hi,

A long time ago, you expressed interest in packaging pscan-tfbs. Unfortunately,
it seems that it did not happen. In Debian, we try not to keep ITP bugs open
for a too long time, as it might cause other prospective maintainers to
refrain from packaging the software.

This is an automatic email to change the status of pscan-tfbs back from ITP
(Intent to Package) to RFP (Request for Package), because this bug hasn't seen
any activity during the last 14 months.

If you are still interested in packaging pscan-tfbs, please send a mail to
<control@bugs.debian.org> with:

 retitle 673182 ITP: pscan-tfbs -- finds overrepresented transcription factor binding sites
 owner 673182 !
 thanks

It is also a good idea to document your progress on this ITP from time to
time, by mailing <673182@bugs.debian.org>.  If you need guidance on how to
package this software, please reply to this email, and/or contact the
debian-mentors@lists.debian.org mailing list.

Thank you for your interest in Debian,
-- 
Lucas, for the QA team <debian-qa@lists.debian.org>



Changed Bug title to 'RFP: pscan-tfbs -- finds overrepresented transcription factor binding sites' from 'ITP: pscan-tfbs -- finds overrepresented transcription factor binding sites' Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Fri, 16 Aug 2013 17:12:55 GMT) Full text and rfc822 format available.

Removed annotation that Bug was owned by Steffen Moeller <steffen_moeller@gmx.de>. Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Fri, 16 Aug 2013 17:12:56 GMT) Full text and rfc822 format available.

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