Debian Bug report logs - #670174
RFP: genomics.cn-soapsnp -- SNP detection in next generation sequencing data

Package: wnpp; Maintainer for wnpp is wnpp@debian.org;

Reported by: Steffen Moeller <steffen_moeller@gmx.de>

Date: Mon, 23 Apr 2012 16:57:01 UTC

Severity: wishlist

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Report forwarded to debian-bugs-dist@lists.debian.org, debian-devel@lists.debian.org, wnpp@debian.org:
Bug#670174; Package wnpp. (Mon, 23 Apr 2012 16:57:04 GMT) Full text and rfc822 format available.

Acknowledgement sent to Steffen Moeller <steffen_moeller@gmx.de>:
New Bug report received and forwarded. Copy sent to debian-devel@lists.debian.org, wnpp@debian.org. (Mon, 23 Apr 2012 16:57:04 GMT) Full text and rfc822 format available.

Message #5 received at submit@bugs.debian.org (full text, mbox):

From: Steffen Moeller <steffen_moeller@gmx.de>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: genomics.cn-soapsnp -- SNP detection in next generation sequencing data
Date: Mon, 23 Apr 2012 18:54:48 +0200
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moeller@gmx.de>

* Package name    : genomics.cn-soapsnp
  Version         : 1.0.3
* URL             : http://soap.genomics.org.cn/soapsnp.html
* License         : GPL-3
  Programming Lang: C++
  Description     : SNP detection in next generation sequencing data

  Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/soapsnp/
  Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/soapsnp/

 For getting ideas on the cause of diseases or their response to
 therapy, and for understanding either for a particular patient,
 doctors around the globe are starting to look at the genes or the
 whole genome and how that sequence is different from a healthy /
 well responding individual.
 .
 SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis
 Package). The program is a resequencing utility. It assembles the
 consensus sequence for the genome of a newly sequenced individual based
 on the alignment of the raw sequencing reads on a known reference. SNPs
 can then be identified on the consensus sequence through the comparison
 with the reference.
 .
 SOAPsnp uses a method based on Bayes' theorem (the reverse probability
 model) to call consensus genotype by carefully considering the data
 quality, alignment, and recurring experimental errors. All these kinds
 of information was integrated into a single quality score for each base
 in PHRED scale to measure the accuracy of consensus calling. Currently,
 it supports the alignment format of SOAPaligner (soap2).




Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, Steffen Moeller <steffen_moeller@gmx.de>:
Bug#670174; Package wnpp. (Mon, 27 May 2013 14:22:06 GMT) Full text and rfc822 format available.

Acknowledgement sent to Lucas Nussbaum <lucas@debian.org>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org, Steffen Moeller <steffen_moeller@gmx.de>. (Mon, 27 May 2013 14:22:06 GMT) Full text and rfc822 format available.

Message #10 received at 670174@bugs.debian.org (full text, mbox):

From: Lucas Nussbaum <lucas@debian.org>
To: 670174@bugs.debian.org
Cc: control@bugs.debian.org
Subject: genomics.cn-soapsnp: changing back from ITP to RFP
Date: Mon, 27 May 2013 15:24:26 +0200
retitle 670174 RFP: genomics.cn-soapsnp -- SNP detection in next generation sequencing data
noowner 670174
tag 670174 - pending
thanks

Hi,

This is an automatic email to change the status of genomics.cn-soapsnp back from ITP
(Intent to Package) to RFP (Request for Package), because this bug hasn't seen
any activity during the last 12 months.

If you are still interested in adopting genomics.cn-soapsnp, please send a mail to
<control@bugs.debian.org> with:

 retitle 670174 ITP: genomics.cn-soapsnp -- SNP detection in next generation sequencing data
 owner 670174 !
 thanks

However, it is not recommended to keep ITP for a long time without acting on
the package, as it might cause other prospective maintainers to refrain from
packaging that software. It is also a good idea to document your progress on
this ITP from time to time, by mailing <670174@bugs.debian.org>.

Thank you for your interest in Debian,
-- 
Lucas, for the QA team <debian-qa@lists.debian.org>



Changed Bug title to 'RFP: genomics.cn-soapsnp -- SNP detection in next generation sequencing data' from 'ITP: genomics.cn-soapsnp -- SNP detection in next generation sequencing data' Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Mon, 27 May 2013 14:34:18 GMT) Full text and rfc822 format available.

Removed annotation that Bug was owned by Steffen Moeller <steffen_moeller@gmx.de>. Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Mon, 27 May 2013 14:34:19 GMT) Full text and rfc822 format available.

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