Debian Bug report logs - #649390
RFP: python-mdanalysis -- MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.

Package: wnpp; Maintainer for wnpp is wnpp@debian.org;

Reported by: Sébastien Buchoux <sebastien.buchoux@gmail.com>

Date: Sun, 20 Nov 2011 15:33:01 UTC

Severity: wishlist

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Report forwarded to debian-bugs-dist@lists.debian.org, sebastien.buchoux@gmail.com, debian-devel@lists.debian.org, wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>:
Bug#649390; Package wnpp. (Sun, 20 Nov 2011 15:33:04 GMT) Full text and rfc822 format available.

Acknowledgement sent to Sébastien Buchoux <sebastien.buchoux@gmail.com>:
New Bug report received and forwarded. Copy sent to sebastien.buchoux@gmail.com, debian-devel@lists.debian.org, wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>. (Sun, 20 Nov 2011 15:33:04 GMT) Full text and rfc822 format available.

Message #5 received at submit@bugs.debian.org (full text, mbox):

From: Sébastien Buchoux <sebastien.buchoux@gmail.com>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: python-mdanalysis -- MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.
Date: Sun, 20 Nov 2011 16:30:08 +0100
Package: wnpp
Severity: wishlist
Owner: "Sébastien Buchoux" <sebastien.buchoux@gmail.com>


* Package name    : python-mdanalysis
  Version         : 0.7.4
  Upstream Author : Sébastien Buchoux <sebastien.buchoux@gmail.com> (Packaging, see http://code.google.com/p/mdanalysis/people/list
                    for complete list of authors)
* URL             : http://code.google.com/p/mdanalysis
* License         : GPL 2
  Programming Lang: Python
  Description     : MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.

MDAnalysis is an object-oriented python toolkit to analyze molecular dynamics
trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber.

It allows one to read molecular dynamics trajectories and access the atomic
coordinates through numpy arrays. This provides a flexible and relatively fast
framework for complex analysis tasks. In addition, CHARMM-style atom selection
commands are implemented. Trajectories can also be manipulated (for instance,
fit to a reference structure) and written out.




Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>:
Bug#649390; Package wnpp. (Sun, 20 Nov 2011 16:06:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to Michael Banck <mbanck@debian.org>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>. (Sun, 20 Nov 2011 16:06:03 GMT) Full text and rfc822 format available.

Message #10 received at 649390@bugs.debian.org (full text, mbox):

From: Michael Banck <mbanck@debian.org>
To: Sébastien Buchoux <sebastien.buchoux@gmail.com>, 649390@bugs.debian.org
Cc: debichem-devel@lists.alioth.debian.org
Subject: Re: Bug#649390: ITP: python-mdanalysis -- MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.
Date: Sun, 20 Nov 2011 16:43:50 +0100
Hi Sébastien,

On Sun, Nov 20, 2011 at 04:30:08PM +0100, Sébastien Buchoux wrote:
> Package: wnpp
> Severity: wishlist
> Owner: "Sébastien Buchoux" <sebastien.buchoux@gmail.com>
> 
> 
> * Package name    : python-mdanalysis
>   Version         : 0.7.4
>   Upstream Author : Sébastien Buchoux <sebastien.buchoux@gmail.com> (Packaging, see http://code.google.com/p/mdanalysis/people/list
>                     for complete list of authors)
> * URL             : http://code.google.com/p/mdanalysis
> * License         : GPL 2
>   Programming Lang: Python
>   Description     : MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.
> 
> MDAnalysis is an object-oriented python toolkit to analyze molecular dynamics
> trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber.
> 
> It allows one to read molecular dynamics trajectories and access the atomic
> coordinates through numpy arrays. This provides a flexible and relatively fast
> framework for complex analysis tasks. In addition, CHARMM-style atom selection
> commands are implemented. Trajectories can also be manipulated (for instance,
> fit to a reference structure) and written out.

If you want, you are welcome to maintain it as part of the Debichem
team, either in subversion or git.  In any case, we would like to add
the package to the molecular dynamics task for Debichem (something we
have to rethink anyway) once it is in Debian.

Are you a Debian Developer, or do you need a sponsor?


Cheers,

Michael




Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>:
Bug#649390; Package wnpp. (Sun, 20 Nov 2011 16:30:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to Sébastien Buchoux <sebastien.buchoux@gmail.com>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>. (Sun, 20 Nov 2011 16:30:03 GMT) Full text and rfc822 format available.

Message #15 received at 649390@bugs.debian.org (full text, mbox):

From: Sébastien Buchoux <sebastien.buchoux@gmail.com>
To: Michael Banck <mbanck@debian.org>
Cc: 649390@bugs.debian.org, debichem-devel@lists.alioth.debian.org
Subject: Re: Bug#649390: ITP: python-mdanalysis -- MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.
Date: Sun, 20 Nov 2011 17:20:09 +0100
Hi Michael,

On 11/20/2011 04:43 PM, Michael Banck wrote:
>[snip]
>
> If you want, you are welcome to maintain it as part of the Debichem
> team, either in subversion or git.  In any case, we would like to add
> the package to the molecular dynamics task for Debichem (something we
> have to rethink anyway) once it is in Debian.

I would be glad to be part of the Debichem!


> Are you a Debian Developer, or do you need a sponsor?

This is the first time I am trying to add one package of mine to the 
official Debian repos so I do need a sponsor.

Thanks for the kind welcome.

BTW, I going to file another ITP bug for a small package needed by 
MDAnalysis. Sorry for the noise!





Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>:
Bug#649390; Package wnpp. (Thu, 16 Feb 2012 17:42:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to Sébastien Buchoux <sebastien.buchoux@gmail.com>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>. (Thu, 16 Feb 2012 17:42:03 GMT) Full text and rfc822 format available.

Message #20 received at 649390@bugs.debian.org (full text, mbox):

From: Sébastien Buchoux <sebastien.buchoux@gmail.com>
To: debichem-devel@lists.alioth.debian.org
Cc: 649390@bugs.debian.org, 649396@bugs.debian.org
Subject: Sponsoring needed for MDAnalysis and related
Date: Thu, 16 Feb 2012 18:33:24 +0100
Hi,

MDAnalysis is an analysis tool for Molecular Dynamics trajectories. I 
made a couple of packages for it but, as a junior-DD, I can't upload 
them to Debian archive.

The two package are here:
http://mentors.debian.net/package/python-mdanalysis (This is the main 
package)
http://mentors.debian.net/package/python-mdanalysis.tests (This one 
contains the test data)

The related ITP bug is 649390.


As a "bonus", MDAnalysis depends on griddataformat which is not included 
in the Debian archive, so I also made a package for it (a couple of 
months ago) which still needs a sponsor:
http://mentors.debian.net/package/python-griddataformats

Related ITP bug: #649396.


Could someone take a look at these packages?

Thanks,

Séb




Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>:
Bug#649390; Package wnpp. (Fri, 02 Mar 2012 10:15:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to Sébastien Buchoux <sebastien.buchoux@gmail.com>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>. (Fri, 02 Mar 2012 10:15:16 GMT) Full text and rfc822 format available.

Message #25 received at 649390@bugs.debian.org (full text, mbox):

From: Sébastien Buchoux <sebastien.buchoux@gmail.com>
To: debichem-devel@lists.alioth.debian.org
Cc: 649390@bugs.debian.org, 649396@bugs.debian.org
Subject: python-mdanalysis and python-griddataformats uploaded on Alioth
Date: Fri, 02 Mar 2012 11:04:01 +0100
Hi,

I just uploaded the git repos for packaging MDAnalysis and 
GridDataFormats on Alioth.

Git repo for MDAnalysis:
git+ssh://git.debian.org/git/debichem/packages/python-mdanalysis.git

Git repo for GridDataFormats:
git+ssh://git.debian.org/git/debichem/packages/python-griddataformats.git


Hope that helps to put them into the Debian archive.

Séb




Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>:
Bug#649390; Package wnpp. (Mon, 27 May 2013 14:18:11 GMT) Full text and rfc822 format available.

Acknowledgement sent to Lucas Nussbaum <lucas@debian.org>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org, "Sébastien Buchoux" <sebastien.buchoux@gmail.com>. (Mon, 27 May 2013 14:18:11 GMT) Full text and rfc822 format available.

Message #30 received at 649390@bugs.debian.org (full text, mbox):

From: Lucas Nussbaum <lucas@debian.org>
To: 649390@bugs.debian.org
Cc: control@bugs.debian.org
Subject: python-mdanalysis: changing back from ITP to RFP
Date: Mon, 27 May 2013 15:24:26 +0200
retitle 649390 RFP: python-mdanalysis -- MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.
noowner 649390
tag 649390 - pending
thanks

Hi,

This is an automatic email to change the status of python-mdanalysis back from ITP
(Intent to Package) to RFP (Request for Package), because this bug hasn't seen
any activity during the last 12 months.

If you are still interested in adopting python-mdanalysis, please send a mail to
<control@bugs.debian.org> with:

 retitle 649390 ITP: python-mdanalysis -- MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.
 owner 649390 !
 thanks

However, it is not recommended to keep ITP for a long time without acting on
the package, as it might cause other prospective maintainers to refrain from
packaging that software. It is also a good idea to document your progress on
this ITP from time to time, by mailing <649390@bugs.debian.org>.

Thank you for your interest in Debian,
-- 
Lucas, for the QA team <debian-qa@lists.debian.org>



Changed Bug title to 'RFP: python-mdanalysis -- MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.' from 'ITP: python-mdanalysis -- MDAnalysis is a Python library to analyze and manipulate molecular dynamics trajectories.' Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Mon, 27 May 2013 14:25:57 GMT) Full text and rfc822 format available.

Removed annotation that Bug was owned by "Sébastien Buchoux" <sebastien.buchoux@gmail.com>. Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Mon, 27 May 2013 14:25:58 GMT) Full text and rfc822 format available.

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