Debian Bug report logs - #647995
ITP: cellprofiler -- quantitatively measure phenotypes

Package: wnpp; Maintainer for wnpp is wnpp@debian.org;

Reported by: ivo@maintz.de

Date: Tue, 8 Nov 2011 08:39:07 UTC

Owned by: ivo@maintz.de

Severity: wishlist

Fix blocked by 647998: RFP: nosexunit -- JUnit like XML reporting for PyUnit

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Report forwarded to debian-bugs-dist@lists.debian.org, debian-devel@lists.debian.org, wnpp@debian.org:
Bug#647995; Package wnpp. (Tue, 08 Nov 2011 08:39:10 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mathieu Malaterre <mathieu.malaterre@gmail.com>:
New Bug report received and forwarded. Copy sent to debian-devel@lists.debian.org, wnpp@debian.org. (Tue, 08 Nov 2011 08:39:10 GMT) Full text and rfc822 format available.

Message #5 received at submit@bugs.debian.org (full text, mbox):

From: Mathieu Malaterre <mathieu.malaterre@gmail.com>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: cellprofiler -- quantitatively measure phenotypes from images automatically
Date: Tue, 08 Nov 2011 09:37:24 +0100
Package: wnpp
Severity: wishlist
Owner: Mathieu Malaterre <mathieu.malaterre@gmail.com>


* Package name    : cellprofiler
  Version         : 2.0
  Upstream Author : Broad Institute
* URL             : http://www.cellprofiler.org
* License         : GPL
  Programming Lang: Python
  Description     : quantitatively measure phenotypes from images automatically

CellProfiler is a software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.




Added blocking bug(s) of 647995: 647998 Request was from Mathieu Malaterre <mathieu.malaterre@gmail.com> to control@bugs.debian.org. (Tue, 08 Nov 2011 08:51:06 GMT) Full text and rfc822 format available.

Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org:
Bug#647995; Package wnpp. (Tue, 08 Nov 2011 09:00:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mathieu Malaterre <mathieu.malaterre@gmail.com>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org. (Tue, 08 Nov 2011 09:00:03 GMT) Full text and rfc822 format available.

Message #12 received at 647995@bugs.debian.org (full text, mbox):

From: Mathieu Malaterre <mathieu.malaterre@gmail.com>
To: 647995@bugs.debian.org
Date: Tue, 8 Nov 2011 09:56:22 +0100
cellprofiler also requires libtiff bindings from python:

Traceback (most recent call last):
  File "setup.py", line 27, in <module>
    from libtiff.libtiff_ctypes import tiff_h_name
ImportError: No module named libtiff.libtiff_ctypes


See:
http://code.google.com/p/pylibtiff/

-- 
Mathieu




Added blocking bug(s) of 647995: 648769 Request was from Mathieu Malaterre <mathieu.malaterre@gmail.com> to control@bugs.debian.org. (Mon, 14 Nov 2011 22:12:03 GMT) Full text and rfc822 format available.

Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org:
Bug#647995; Package wnpp. (Mon, 05 Dec 2011 15:33:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mathieu Malaterre <mathieu.malaterre@gmail.com>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org. (Mon, 05 Dec 2011 15:33:04 GMT) Full text and rfc822 format available.

Message #19 received at 647995@bugs.debian.org (full text, mbox):

From: Mathieu Malaterre <mathieu.malaterre@gmail.com>
To: Control bugs server <control@bugs.debian.org>
Cc: 647995@bugs.debian.org, Thouis Jones <thouis.jones@curie.fr>, Steffen Möller <steffen_moeller@gmx.de>
Subject: Giving up on CellProfiler
Date: Mon, 5 Dec 2011 16:29:54 +0100
forward 647995 http://mail.python.org/pipermail/python-dev/2011-November/114668.html
thanks

CellProfiler is extremely easy to use from any user location. However
it is extremely hard to package for debian. See:

[ImportError: No module named multiarray (is back)]
http://mail.python.org/pipermail/python-dev/2011-November/114668.html

I am therefore giving up on CellProfiler packaging for now.

Thanks.




Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org:
Bug#647995; Package wnpp. (Mon, 05 Dec 2011 15:39:10 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mathieu Malaterre <mathieu.malaterre@gmail.com>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org. (Mon, 05 Dec 2011 15:39:10 GMT) Full text and rfc822 format available.

Message #24 received at 647995@bugs.debian.org (full text, mbox):

From: Mathieu Malaterre <mathieu.malaterre@gmail.com>
To: Control bugs server <control@bugs.debian.org>
Cc: 647995@bugs.debian.org
Date: Mon, 5 Dec 2011 16:34:20 +0100
forwarded 647995
http://mail.python.org/pipermail/python-dev/2011-November/114668.html
thanks


FYI, current package is at:

http://anonscm.debian.org/viewvc/debian-med/trunk/packages/cellprofiler/trunk/




Changed Bug submitter to 'Mathieu Malaterre <malat@debian.org>' from 'Mathieu Malaterre <mathieu.malaterre@gmail.com>' Request was from Mathieu Malaterre <malat@debian.org> to control@bugs.debian.org. (Wed, 28 Mar 2012 13:55:40 GMT) Full text and rfc822 format available.

Owner changed from Mathieu Malaterre <mathieu.malaterre@gmail.com> to Mathieu Malaterre <malat@debian.org>. Request was from Mathieu Malaterre <malat@debian.org> to control@bugs.debian.org. (Wed, 28 Mar 2012 13:55:58 GMT) Full text and rfc822 format available.

Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org:
Bug#647995; Package wnpp. (Fri, 27 Jul 2012 21:03:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mathieu Malaterre <malat@debian.org>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org. (Fri, 27 Jul 2012 21:03:03 GMT) Full text and rfc822 format available.

Message #33 received at 647995@bugs.debian.org (full text, mbox):

From: Mathieu Malaterre <malat@debian.org>
To: Control bugs server <control@bugs.debian.org>
Cc: 647995@bugs.debian.org
Subject: cellprofiler
Date: Fri, 27 Jul 2012 22:59:24 +0200
retitle 647995 RFP: cellprofiler -- quantitatively measure phenotypes
from images automatically
thanks

given python-libtiff status:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=663681#22

I'd prefer giving up on cellprofiler. Anyone interested in taking
over, you can find remainings of my work in debian-med svn.

Thanks



Changed Bug title to 'RFP: cellprofiler -- quantitatively measure phenotypes' from 'ITP: cellprofiler -- quantitatively measure phenotypes from images automatically' Request was from Mathieu Malaterre <malat@debian.org> to control@bugs.debian.org. (Fri, 27 Jul 2012 21:03:05 GMT) Full text and rfc822 format available.

Reply sent to Bart Martens <bartm@debian.org>:
You have taken responsibility. (Sat, 28 Jul 2012 08:54:03 GMT) Full text and rfc822 format available.

Notification sent to Mathieu Malaterre <malat@debian.org>:
Bug acknowledged by developer. (Sat, 28 Jul 2012 08:54:03 GMT) Full text and rfc822 format available.

Message #40 received at 647995-done@bugs.debian.org (full text, mbox):

From: Bart Martens <bartm@debian.org>
To: 647995-done@bugs.debian.org
Subject: RFP: cellprofiler -- quantitatively measure phenotypes from images automatically
Date: Sat, 28 Jul 2012 08:52:24 +0000
Since Mathieu Malaterre originally submitted this bug as an ITP, and nobody
else commented, and Mathieu Malaterre now writes "I'd prefer giving up on
cellprofiler", and we already have many RFP's nobody looks at, I'm closing this
RFP now.  Anyone, feel free to reopen this RFP if you have reasons to want this
software in Debian.

Regards,

Bart Martens



Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Sun, 26 Aug 2012 07:30:08 GMT) Full text and rfc822 format available.

Bug unarchived. Request was from Ivo Maintz <ivo@maintz.de> to control@bugs.debian.org. (Sun, 24 Feb 2013 13:33:04 GMT) Full text and rfc822 format available.

Bug reopened Request was from Ivo Maintz <ivo@maintz.de> to control@bugs.debian.org. (Sun, 24 Feb 2013 13:33:05 GMT) Full text and rfc822 format available.

Changed Bug submitter to 'ivo@maintz.de' from 'Mathieu Malaterre <malat@debian.org>' Request was from Ivo Maintz <ivo@maintz.de> to control@bugs.debian.org. (Sun, 24 Feb 2013 13:33:05 GMT) Full text and rfc822 format available.

Changed Bug title to 'ITP: cellprofiler -- quantitatively measure phenotypes' from 'RFP: cellprofiler -- quantitatively measure phenotypes' Request was from Ivo Maintz <ivo@maintz.de> to control@bugs.debian.org. (Sun, 24 Feb 2013 13:33:06 GMT) Full text and rfc822 format available.

Owner changed from Mathieu Malaterre <malat@debian.org> to ivo@maintz.de. Request was from Mathieu Malaterre <malat@debian.org> to control@bugs.debian.org. (Sun, 24 Feb 2013 14:57:09 GMT) Full text and rfc822 format available.

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