Debian Bug report logs - #627896
hdf5: FTBFS on hurd-i386

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Pino Toscano <toscano.pino@tiscali.it>

To: Debian Bug Tracking System <submit@bugs.debian.org>

Subject: hdf5: FTBFS on hurd-i386

Date: Wed, 25 May 2011 11:47:44 +0200

[Message part 1 (text/plain, inline)]

Package: hdf5
Version: 1.8.7-1
Severity: important
Tags: patch
User: debian-hurd@lists.debian.org
Usertags: hurd

Hi,

currently, hdf5 cannot be compiled on hurd-i386.
There are three kind of issues, solved by the attached patches:
- debian_no-lam.diff:
  remove the unneeded build dependency on lam-dev (unavailable on Hurd)
- debian_openmpi-on-hurd.diff:
  add hurd-i386 as architecture for openmpi (we have it)
- path_max.diff:
  a semi-hackish patch to avoid the issue of PATH_MAX not being available
  on Hurd; not really clean and suitable for upstream though, but can do
  the job for making hdf5 compile and available in Debian

It would be nice if you could review and include them in sight of your
coming-soon MPI transition.

Thanks,
-- 
Pino

[debian_no-lam.diff (text/plain, attachment)]

[debian_openmpi-on-hurd.diff (text/plain, attachment)]

[path_max.diff (text/x-c, attachment)]

Message #14 received at 627896-close@bugs.debian.org (full text, mbox, reply):

From: Sylvestre Ledru <sylvestre@debian.org>

To: 627896-close@bugs.debian.org

Subject: Bug#627896: fixed in hdf5 1.8.7-2~exp1

Date: Thu, 04 Aug 2011 21:02:34 +0000

Source: hdf5
Source-Version: 1.8.7-2~exp1

We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive:

hdf5-tools_1.8.7-2~exp1_i386.deb
  to main/h/hdf5/hdf5-tools_1.8.7-2~exp1_i386.deb
hdf5_1.8.7-2~exp1.debian.tar.gz
  to main/h/hdf5/hdf5_1.8.7-2~exp1.debian.tar.gz
hdf5_1.8.7-2~exp1.dsc
  to main/h/hdf5/hdf5_1.8.7-2~exp1.dsc
libhdf5-7_1.8.7-2~exp1_i386.deb
  to main/h/hdf5/libhdf5-7_1.8.7-2~exp1_i386.deb
libhdf5-dev_1.8.7-2~exp1_i386.deb
  to main/h/hdf5/libhdf5-dev_1.8.7-2~exp1_i386.deb
libhdf5-doc_1.8.7-2~exp1_all.deb
  to main/h/hdf5/libhdf5-doc_1.8.7-2~exp1_all.deb
libhdf5-mpi-dev_1.8.7-2~exp1_i386.deb
  to main/h/hdf5/libhdf5-mpi-dev_1.8.7-2~exp1_i386.deb
libhdf5-mpich2-7_1.8.7-2~exp1_i386.deb
  to main/h/hdf5/libhdf5-mpich2-7_1.8.7-2~exp1_i386.deb
libhdf5-mpich2-dev_1.8.7-2~exp1_i386.deb
  to main/h/hdf5/libhdf5-mpich2-dev_1.8.7-2~exp1_i386.deb
libhdf5-openmpi-7_1.8.7-2~exp1_i386.deb
  to main/h/hdf5/libhdf5-openmpi-7_1.8.7-2~exp1_i386.deb
libhdf5-openmpi-dev_1.8.7-2~exp1_i386.deb
  to main/h/hdf5/libhdf5-openmpi-dev_1.8.7-2~exp1_i386.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 627896@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sylvestre Ledru <sylvestre@debian.org> (supplier of updated hdf5 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


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Hash: SHA1

Format: 1.8
Date: Thu, 04 Aug 2011 14:06:18 +0200
Source: hdf5
Binary: libhdf5-7 libhdf5-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-mpich2-7 libhdf5-mpich2-dev libhdf5-mpi-dev libhdf5-doc hdf5-tools
Architecture: source all i386
Version: 1.8.7-2~exp1
Distribution: experimental
Urgency: low
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Changed-By: Sylvestre Ledru <sylvestre@debian.org>
Description: 
 hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
 libhdf5-7  - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
 libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
 libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
 libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 ve
 libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 versio
 libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 ve
 libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI versi
 libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI v
Closes: 566541 604714 627896 636185
Changes: 
 hdf5 (1.8.7-2~exp1) experimental; urgency=low
 .
   * Rename libhdf5-serial-* to libhdf5 to avoid confusion and to highlight
     which one is the default version (Closes: #566541)
   * hdf5 packages renamed to use soname versionning. Upstream looks like ready
     to support them correctly. Therefor, here is the changes:
     libhdf5-serial-1.8.7 => libhdf5-7
     libhdf5-openmpi-1.8.7 => libhdf5-openmpi-7
     libhdf5-mpich2-1.8.7 => libhdf5-mpich2-7
   * C, C++ and Fortran symbol files introduced (mpich2, openmpi and serial).
   * Support of hurd-i386. Thanks to Pino Toscano for doing the work.
     (Closes: #627896)
   * Drop the useless lam4-dev dependency. Thanks to Pino Toscano & Adam C
     Powell IV (Closes: #604714)
   * armel/arm added to the archs of libhdf5-openmpi-dev (Closes: #636185)
   * .la file are no longer shipped
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 cff468e9a888c99518bbb6b0e9fca23c52e907b419a6812f43281424a93de115 11915804 libhdf5-doc_1.8.7-2~exp1_all.deb
 cfba708178bfd6a9a21b4d33675eced03f76c071a967f04d3aeb138852f41ad8 1385780 libhdf5-7_1.8.7-2~exp1_i386.deb
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Files: 
 0fbf75d4c3680c5b9c95648f00cd42b9 1640 science optional hdf5_1.8.7-2~exp1.dsc
 551fd2b1c2b9c963262907d7849978ff 12657049 science optional hdf5_1.8.7-2~exp1.debian.tar.gz
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