Debian Bug report logs - #592892
openmpi: FTBFS: Compilation errors

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Daniel Schepler <dschepler@gmail.com>

To: submit@bugs.debian.org

Subject: openmpi: FTBFS: Compilation errors

Date: Fri, 13 Aug 2010 10:25:31 -0700

Source: openmpi
Version: 1.4.2-3
Severity: serious

From my pbuilder build log:

...
depbase=`echo dt_module.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
        /bin/bash ../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../../ompi/datatype -I../../opal/include -I../../orte/include -I../../ompi/include -I../../opal/mca/paffinity/linux/plpa/src/libplpa   -I../../../.. -I../.. -
I../../../../opal/include -I../../../../orte/include -I../../../../ompi/include    -DNDEBUG -Wall -g -O2 -finline-functions -fno-strict-aliasing -pthread -fvisibility=hidden -MT dt_module.lo -MD -MP -MF $depbase.Tpo -c -o dt_module.lo 
../../../../ompi/datatype/dt_module.c &&\
        mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../../../ompi/datatype -I../../opal/include -I../../orte/include -I../../ompi/include -I../../opal/mca/paffinity/linux/plpa/src/libplpa -I../../../.. -I../.. -I../../../../opal/include -I../../../../orte/include -
I../../../../ompi/include -DNDEBUG -Wall -g -O2 -finline-functions -fno-strict-aliasing -pthread -fvisibility=hidden -MT dt_module.lo -MD -MP -MF .deps/dt_module.Tpo -c ../../../../ompi/datatype/dt_module.c  -fPIC -DPIC -o 
.libs/dt_module.o
../../../../ompi/datatype/dt_module.c:177: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:182: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:187: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:192: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:203: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:208: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:219: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:224: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:229: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:234: error: expected expression before ')' token
../../../../ompi/datatype/dt_module.c:250: error: expected expression before ')' token
make[3]: *** [dt_module.lo] Error 1
make[3]: Leaving directory `/tmp/buildd/openmpi-1.4.2/build/shared/ompi/datatype'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/tmp/buildd/openmpi-1.4.2/build/shared/ompi'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/tmp/buildd/openmpi-1.4.2/build/shared'
make: *** [build-shared-stamp] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
-- 
Daniel Schepler

Message #10 received at 592892@bugs.debian.org (full text, mbox, reply):

From: Sebastian Andrzej Siewior <sebastian@breakpoint.cc>

To: Daniel Schepler <dschepler@gmail.com>

Cc: 592892@bugs.debian.org

Subject: Re: openmpi: FTBFS: Compilation errors

Date: Wed, 18 Aug 2010 16:53:44 +0200

[Message part 1 (text/plain, inline)]

tags 592892 + patch
thanks

* Daniel Schepler | 2010-08-13 10:25:31 [-0700]:

>Source: openmpi
>Version: 1.4.2-3
>Severity: serious
>
>../../../../ompi/datatype/dt_module.c:177: error: expected expression before ')' token

In Line 177 OMPI_ALIGNMENT_FORTRAN_LOGICAL1 is not really set, it is:
 /* Size of Fortran 77 LOGICAL*1 */
 #define OMPI_SIZEOF_FORTRAN_LOGICAL1 

which is set by OMPI_F77_CHECK defined in config/f77_check.m4. By now we
are in the middle of the hell. Lets go further.
That macro has the C default for $ofc_type_alignment and replace it with
the Fortran value in the macro OMPI_F77_GET_ALIGNMENT()
config/f77_get_alignment.m4.
The value should be set in third last line

| $2=AS_VAR_GET([type_var])

It was transformed earlier into
| ofc_type_alignment=$ompi_cv_f77_alignment_LOGICALp1
but become something totally differnt,

|ofc_type_alignment=`eval 'as_val=${'type_var'};$as_echo "$as_val"'`

After carefully replacing it with AS_VAR_COPY we get
| eval ofc_type_alignment=\$$as_type_var

which does the job for now. Puh. Now out quick!

Sebastian

[0001-Add-fix-for-592892.patch (text/plain, attachment)]

Message #17 received at 592892@bugs.debian.org (full text, mbox, reply):

From: Ralf Wildenhues <Ralf.Wildenhues@gmx.de>

To: Sebastian Andrzej Siewior <sebastian@breakpoint.cc>, bug-autoconf@gnu.org

Cc: Daniel Schepler <dschepler@gmail.com>, 592892@bugs.debian.org

Subject: openmpi: FTBFS: Compilation errors

Date: Wed, 18 Aug 2010 19:31:42 +0200

clone 592892 -1
reassign -1 autoconf
retitle -1 AS_VAR_GET regression
tags -1 + upstream
thanks

[ http://bugs.debian.org/592892 ]

If I got above right, then I'm cloning this bug for Autoconf and
marking it as upstream bug; adding bug-autoconf in Cc:.

* Sebastian Andrzej Siewior wrote on Wed, Aug 18, 2010 at 04:53:44PM CEST:
> config/f77_get_alignment.m4.
> The value should be set in third last line
> 
> | $2=AS_VAR_GET([type_var])
> 
> It was transformed earlier into
> | ofc_type_alignment=$ompi_cv_f77_alignment_LOGICALp1
> but become something totally differnt,
> 
> |ofc_type_alignment=`eval 'as_val=${'type_var'};$as_echo "$as_val"'`

> After carefully replacing it with AS_VAR_COPY we get
> | eval ofc_type_alignment=\$$as_type_var
> 
> which does the job for now. Puh. Now out quick!

Well, AS_VAR_GET is (intentionally) undocumented, so your use of
AS_VAR_COPY is the right thing to do (which is why I'll leave the
original bug for openmpi).  Still, this is a regression in upstream
Autoconf that I think should be fixed.  The issue is that '*' needs to
be translated to 'p' here and the string treated as literal here:

cat >configure.ac <<\EOF
AC_DEFUN([OMPI_F77_GET_ALIGNMENT],[
    AS_VAR_PUSHDEF([type_var], [ompi_cv_f77_alignment_$1])
    $2=AS_VAR_GET([type_var])
    AS_VAR_POPDEF([type_var])dnl
])

AC_INIT
OMPI_F77_GET_ALIGNMENT([LOGICAL*1], [result])
EOF

autoconf
tail configure

should contain a line like:
  result=$ompi_cv_f77_alignment_LOGICALp1

but instead has something like:
    as_type_var=`$as_echo "ompi_cv_f77_alignment_LOGICAL*1" | $as_tr_sh`
    result=`eval 'as_val=${'type_var'};$as_echo "$as_val"'`

Thanks,
Ralf

Message #22 received at 592892@bugs.debian.org (full text, mbox, reply):

From: Russ Allbery <rra@stanford.edu>

To: Sebastian Andrzej Siewior <sebastian@breakpoint.cc>

Cc: bug-autoconf@gnu.org, Daniel Schepler <dschepler@gmail.com>, 592892@bugs.debian.org

Subject: Re: openmpi: FTBFS: Compilation errors

Date: Wed, 18 Aug 2010 18:03:59 -0700

Ralf Wildenhues <Ralf.Wildenhues@gmx.de> writes:

> Well, AS_VAR_GET is (intentionally) undocumented, so your use of
> AS_VAR_COPY is the right thing to do (which is why I'll leave the
> original bug for openmpi).  Still, this is a regression in upstream
> Autoconf that I think should be fixed.  The issue is that '*' needs to
> be translated to 'p' here and the string treated as literal here:

> cat >configure.ac <<\EOF
> AC_DEFUN([OMPI_F77_GET_ALIGNMENT],[
>     AS_VAR_PUSHDEF([type_var], [ompi_cv_f77_alignment_$1])
>     $2=AS_VAR_GET([type_var])
>     AS_VAR_POPDEF([type_var])dnl
> ])

> AC_INIT
> OMPI_F77_GET_ALIGNMENT([LOGICAL*1], [result])
> EOF

> autoconf
> tail configure

> should contain a line like:
>   result=$ompi_cv_f77_alignment_LOGICALp1

> but instead has something like:
>     as_type_var=`$as_echo "ompi_cv_f77_alignment_LOGICAL*1" | $as_tr_sh`
>     result=`eval 'as_val=${'type_var'};$as_echo "$as_val"'`

This smells like fallout from:

** The macros AS_TR_SH and AS_TR_CPP no longer expand their results.

in 2.66.  I tracked this down in another project the other day.  The other
project was using AR_TR_CPP directly to generate content which was
eventually passed into one of the autoheader macros (like AH_BOTTOM).

I'm not sure why this change was made, but it does seem to be breaking
assumptions made by real-world Autoconf macros.

-- 
Russ Allbery (rra@stanford.edu)             <http://www.eyrie.org/~eagle/>

Message #29 received at 592892@bugs.debian.org (full text, mbox, reply):

From: Jeff Squyres <jsquyres@cisco.com>

To: Russ Allbery <rra@stanford.edu>

Cc: Sebastian Andrzej Siewior <sebastian@breakpoint.cc>, Daniel Schepler <dschepler@gmail.com>, bug-autoconf@gnu.org, 592892@bugs.debian.org

Subject: Re: openmpi: FTBFS: Compilation errors

Date: Fri, 27 Aug 2010 13:57:37 -0400

On Aug 18, 2010, at 9:03 PM, Russ Allbery wrote:

>>    $2=AS_VAR_GET([type_var])

This was the badness, as pointed out by Ralf here:

    http://www.open-mpi.org/community/lists/devel/2010/08/8292.php

Fix will committed to upstream SVN this evening; a patch for the v1.4 series is already available here:

    https://svn.open-mpi.org/trac/ompi/ticket/2559

-- 
Jeff Squyres
jsquyres@cisco.com
For corporate legal information go to:
http://www.cisco.com/web/about/doing_business/legal/cri/

Message #34 received at 592892@bugs.debian.org (full text, mbox, reply):

From: Sebastian Andrzej Siewior <sebastian@breakpoint.cc>

To: Jeff Squyres <jsquyres@cisco.com>

Cc: Russ Allbery <rra@stanford.edu>, Daniel Schepler <dschepler@gmail.com>, bug-autoconf@gnu.org, 592892@bugs.debian.org

Subject: Re: openmpi: FTBFS: Compilation errors

Date: Fri, 27 Aug 2010 20:55:56 +0200

* Jeff Squyres | 2010-08-27 13:57:37 [-0400]:

>On Aug 18, 2010, at 9:03 PM, Russ Allbery wrote:
>
>>>    $2=AS_VAR_GET([type_var])
>
>This was the badness, as pointed out by Ralf here:
>
>    http://www.open-mpi.org/community/lists/devel/2010/08/8292.php
>
>Fix will committed to upstream SVN this evening; a patch for the v1.4 series is already available here:
>
>    https://svn.open-mpi.org/trac/ompi/ticket/2559
>

Ah so my patch was usefull after all :) Sorry for not replying but I
wasn't Cc and I'm not subscribed. Thanks for taking care of this.

Sebastian

Message #39 received at 592892@bugs.debian.org (full text, mbox, reply):

From: Manuel Prinz <manuel@debian.org>

To: Jeff Squyres <jsquyres@cisco.com>, 592892@bugs.debian.org

Cc: Russ Allbery <rra@stanford.edu>, Sebastian Andrzej Siewior <sebastian@breakpoint.cc>, Daniel Schepler <dschepler@gmail.com>, control@bugs.debian.org

Subject: Re: [Pkg-openmpi-maintainers] Bug#592892: openmpi: FTBFS: Compilation errors

Date: Mon, 30 Aug 2010 10:26:08 +0200

tags 592892 + confirmed pending
thanks

Am Freitag, den 27.08.2010, 13:57 -0400 schrieb Jeff Squyres:
> This was the badness, as pointed out by Ralf here:
> 
>     http://www.open-mpi.org/community/lists/devel/2010/08/8292.php
> 
> Fix will committed to upstream SVN this evening; a patch for the v1.4
> series is already available here:
> 
>     https://svn.open-mpi.org/trac/ompi/ticket/2559
> 

Thanks to everyone involved for tracking and fixing this! I'll upload a
fixed version to Debian later today.

Best regards,
Manuel

Message #50 received at 592892-close@bugs.debian.org (full text, mbox, reply):

From: Manuel Prinz <manuel@debian.org>

To: 592892-close@bugs.debian.org

Subject: Bug#592892: fixed in openmpi 1.4.2-4

Date: Wed, 01 Sep 2010 16:36:36 +0000

Source: openmpi
Source-Version: 1.4.2-4

We believe that the bug you reported is fixed in the latest version of
openmpi, which is due to be installed in the Debian FTP archive:

libopenmpi-dbg_1.4.2-4_amd64.deb
  to main/o/openmpi/libopenmpi-dbg_1.4.2-4_amd64.deb
libopenmpi-dev_1.4.2-4_amd64.deb
  to main/o/openmpi/libopenmpi-dev_1.4.2-4_amd64.deb
libopenmpi1.3_1.4.2-4_amd64.deb
  to main/o/openmpi/libopenmpi1.3_1.4.2-4_amd64.deb
openmpi-bin_1.4.2-4_amd64.deb
  to main/o/openmpi/openmpi-bin_1.4.2-4_amd64.deb
openmpi-checkpoint_1.4.2-4_amd64.deb
  to main/o/openmpi/openmpi-checkpoint_1.4.2-4_amd64.deb
openmpi-common_1.4.2-4_all.deb
  to main/o/openmpi/openmpi-common_1.4.2-4_all.deb
openmpi-doc_1.4.2-4_all.deb
  to main/o/openmpi/openmpi-doc_1.4.2-4_all.deb
openmpi_1.4.2-4.diff.gz
  to main/o/openmpi/openmpi_1.4.2-4.diff.gz
openmpi_1.4.2-4.dsc
  to main/o/openmpi/openmpi_1.4.2-4.dsc



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 592892@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Manuel Prinz <manuel@debian.org> (supplier of updated openmpi package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Wed, 01 Sep 2010 17:53:44 +0200
Source: openmpi
Binary: openmpi-bin libopenmpi-dev libopenmpi1.3 openmpi-common openmpi-doc libopenmpi-dbg openmpi-checkpoint
Architecture: source amd64 all
Version: 1.4.2-4
Distribution: unstable
Urgency: low
Maintainer: Debian Open MPI Maintainers <pkg-openmpi-maintainers@lists.alioth.debian.org>
Changed-By: Manuel Prinz <manuel@debian.org>
Description: 
 libopenmpi-dbg - high performance message passing library -- debug library
 libopenmpi-dev - high performance message passing library -- header files
 libopenmpi1.3 - high performance message passing library -- shared library
 openmpi-bin - high performance message passing library -- binaries
 openmpi-checkpoint - high performance message passing library -- checkpoint support
 openmpi-common - high performance message passing library -- common files
 openmpi-doc - high performance message passing library -- man pages
Closes: 592887 592892 593481
Changes: 
 openmpi (1.4.2-4) unstable; urgency=low
 .
   * Added patch to remove use of AS_VAR_GET. Closes: #592892.
   * debian/control: Added powerpcspe to architecture list. Thanks to
     Sebastian Andrzej Siewior for the patch! Closes: #593481.
   * Build with support for Torque (except on HURD). Closes: #592887.
   * Updated Standards-Version to 3.9.1. No changes needed.
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