Debian Bug report logs - #592885
FTBFS [hppa]: final link failed: Nonrepresentable section on output

Package: src:atlas; Maintainer for src:atlas is Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>;

Reported by: dann frazier <dannf@debian.org>

Date: Fri, 13 Aug 2010 16:18:05 UTC

Severity: important

Tags: sid, squeeze, wheezy

Done: Yaroslav Halchenko <debian@onerussian.com>

Bug is archived. No further changes may be made.

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Report forwarded to debian-bugs-dist@lists.debian.org, debian-hppa@lists.debian.org, Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>:
Bug#592885; Package src:hpcc. (Fri, 13 Aug 2010 16:18:07 GMT) Full text and rfc822 format available.

Acknowledgement sent to dann frazier <dannf@debian.org>:
New Bug report received and forwarded. Copy sent to debian-hppa@lists.debian.org, Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>. (Fri, 13 Aug 2010 16:18:07 GMT) Full text and rfc822 format available.

Message #5 received at submit@bugs.debian.org (full text, mbox):

From: dann frazier <dannf@debian.org>
To: submit@bugs.debian.org
Subject: FTBFS [hppa]: final link failed: Nonrepresentable section on output
Date: Fri, 13 Aug 2010 10:15:16 -0600
Source: hpcc
Version: 1.4.0-2
Severity: serious
User: debian-hppa@lists.debian.org
Usertags: hppa

hpcc fails to build on hppa.
Complete build logs are available here:
  https://buildd.debian.org/build.cgi?pkg=hpcc&dist=unstable

Here's the failing bit of the build log:
[...]
mpicc -o ../../../../FFT/tstfft.o -c ../../../../FFT/tstfft.c -I../../../../include  -DHPL_CALL_CBLAS -I../../../include -I../../../include/Debian   -fomit-frame-pointer -O3 -funroll-loops -W -Wall
../../../../FFT/tstfft.c: In function 'HPCC_TestFFT':
../../../../FFT/tstfft.c:121: warning: 'outFile' may be used uninitialized in this function
mpicc -o ../../../../FFT/wrapfftw.o -c ../../../../FFT/wrapfftw.c -I../../../../include  -DHPL_CALL_CBLAS -I../../../include -I../../../include/Debian   -fomit-frame-pointer -O3 -funroll-loops -W -Wall
mpicc -o ../../../../FFT/wrapmpifftw.o -c ../../../../FFT/wrapmpifftw.c -I../../../../include  -DHPL_CALL_CBLAS -I../../../include -I../../../include/Debian   -fomit-frame-pointer -O3 -funroll-loops -W -Wall
../../../../FFT/wrapmpifftw.c: In function 'HPCC_fftw_mpi':
../../../../FFT/wrapmpifftw.c:113: warning: unused parameter 'n_fields'
mpicc -o ../../../../FFT/mpifft.o -c ../../../../FFT/mpifft.c -I../../../../include  -DHPL_CALL_CBLAS -I../../../include -I../../../include/Debian   -fomit-frame-pointer -O3 -funroll-loops -W -Wall
../../../../FFT/mpifft.c: In function 'HPCC_MPIFFT':
../../../../FFT/mpifft.c:232: warning: 'n' may be used uninitialized in this function
../../../../FFT/mpifft.c:165: warning: 'outFile' may be used uninitialized in this function
ar r ../../../lib/Debian/libhpl.a ../../../src/auxil/HPL_dlacpy.o ../../../src/auxil/HPL_dlatcpy.o ../../../src/auxil/HPL_fprintf.o ../../../src/auxil/HPL_warn.o ../../../src/auxil/HPL_abort.o ../../../src/auxil/HPL_dlaprnt.o ../../../src/auxil/HPL_dlange.o ../../../src/auxil/HPL_dlamch.o ../../../src/blas/HPL_dcopy.o ../../../src/blas/HPL_daxpy.o ../../../src/blas/HPL_dscal.o ../../../src/blas/HPL_idamax.o ../../../src/blas/HPL_dgemv.o ../../../src/blas/HPL_dtrsv.o ../../../src/blas/HPL_dger.o ../../../src/blas/HPL_dgemm.o ../../../src/blas/HPL_dtrsm.o ../../../src/comm/HPL_1ring.o ../../../src/comm/HPL_1rinM.o ../../../src/comm/HPL_2ring.o ../../../src/comm/HPL_2rinM.o ../../../src/comm/HPL_blong.o ../../../src/comm/HPL_blonM.o ../../../src/comm/HPL_packL.o ../../../src/comm/HPL_copyL.o ../../../src/comm/HPL_binit.o ../../../src/comm/HPL_bcast.o ../../../src/comm/HPL_bwait.o ../../../src/comm/HPL_send.o ../../../src/comm/HPL_recv.o ../../../src/comm/HPL_sdrv.o ../../../src/
 grid/HPL_grid_init.o ../../../src/grid/HPL_pnum.o ../../../src/grid/HPL_grid_info.o ../../../src/grid/HPL_grid_exit.o ../../../src/grid/HPL_broadcast.o ../../../src/grid/HPL_reduce.o ../../../src/grid/HPL_all_reduce.o ../../../src/grid/HPL_barrier.o ../../../src/grid/HPL_min.o ../../../src/grid/HPL_max.o ../../../src/grid/HPL_sum.o ../../../src/panel/HPL_pdpanel_new.o ../../../src/panel/HPL_pdpanel_init.o ../../../src/panel/HPL_pdpanel_disp.o ../../../src/panel/HPL_pdpanel_free.o ../../../src/pauxil/HPL_indxg2l.o ../../../src/pauxil/HPL_indxg2lp.o ../../../src/pauxil/HPL_indxg2p.o ../../../src/pauxil/HPL_indxl2g.o ../../../src/pauxil/HPL_infog2l.o ../../../src/pauxil/HPL_numroc.o ../../../src/pauxil/HPL_numrocI.o ../../../src/pauxil/HPL_dlaswp00N.o ../../../src/pauxil/HPL_dlaswp10N.o ../../../src/pauxil/HPL_dlaswp01N.o ../../../src/pauxil/HPL_dlaswp01T.o ../../../src/pauxil/HPL_dlaswp02N.o ../../../src/pauxil/HPL_dlaswp03N.o ../../../src/pauxil/HPL_dlaswp03T.o ../../../src/p
 auxil/HPL_dlaswp04N.o ../../../src/pauxil/HPL_dlaswp04T.o ../../../src/pauxil/HPL_dlaswp05N.o ../../../src/pauxil/HPL_dlaswp05T.o ../../../src/pauxil/HPL_dlaswp06N.o ../../../src/pauxil/HPL_dlaswp06T.o ../../../src/pauxil/HPL_pwarn.o ../../../src/pauxil/HPL_pabort.o ../../../src/pauxil/HPL_pdlaprnt.o ../../../src/pauxil/HPL_pdlamch.o ../../../src/pauxil/HPL_pdlange.o ../../../src/pfact/HPL_dlocmax.o ../../../src/pfact/HPL_dlocswpN.o ../../../src/pfact/HPL_dlocswpT.o ../../../src/pfact/HPL_pdmxswp.o ../../../src/pfact/HPL_pdpancrN.o ../../../src/pfact/HPL_pdpancrT.o ../../../src/pfact/HPL_pdpanllN.o ../../../src/pfact/HPL_pdpanllT.o ../../../src/pfact/HPL_pdpanrlN.o ../../../src/pfact/HPL_pdpanrlT.o ../../../src/pfact/HPL_pdrpanllN.o ../../../src/pfact/HPL_pdrpanllT.o ../../../src/pfact/HPL_pdrpancrN.o ../../../src/pfact/HPL_pdrpancrT.o ../../../src/pfact/HPL_pdrpanrlN.o ../../../src/pfact/HPL_pdrpanrlT.o ../../../src/pfact/HPL_pdfact.o ../../../src/pgesv/HPL_pipid.o ../../..
 /src/pgesv/HPL_plindx0.o ../../../src/pgesv/HPL_pdlaswp00N.o ../../../src/pgesv/HPL_pdlaswp00T.o ../../../src/pgesv/HPL_perm.o ../../../src/pgesv/HPL_logsort.o ../../../src/pgesv/HPL_plindx10.o ../../../src/pgesv/HPL_plindx1.o ../../../src/pgesv/HPL_spreadN.o ../../../src/pgesv/HPL_spreadT.o ../../../src/pgesv/HPL_rollN.o ../../../src/pgesv/HPL_rollT.o ../../../src/pgesv/HPL_equil.o ../../../src/pgesv/HPL_pdlaswp01N.o ../../../src/pgesv/HPL_pdlaswp01T.o ../../../src/pgesv/HPL_pdupdateNN.o ../../../src/pgesv/HPL_pdupdateNT.o ../../../src/pgesv/HPL_pdupdateTN.o ../../../src/pgesv/HPL_pdupdateTT.o ../../../src/pgesv/HPL_pdtrsv.o ../../../src/pgesv/HPL_pdgesv0.o ../../../src/pgesv/HPL_pdgesvK1.o ../../../src/pgesv/HPL_pdgesvK2.o ../../../src/pgesv/HPL_pdgesv.o ../../../testing/matgen/HPL_dmatgen.o ../../../testing/matgen/HPL_ladd.o ../../../testing/matgen/HPL_lmul.o ../../../testing/matgen/HPL_xjumpm.o ../../../testing/matgen/HPL_jumpit.o ../../../testing/matgen/HPL_rand.o ../..
 /../testing/matgen/HPL_setran.o ../../../testing/timer/HPL_timer.o ../../../testing/timer/HPL_timer_cputime.o ../../../testing/timer/HPL_timer_walltime.o ../../../testing/pmatgen/HPL_pdmatgen.o ../../../testing/ptimer/HPL_ptimer.o ../../../testing/ptimer/HPL_ptimer_cputime.o ../../../testing/ptimer/HPL_ptimer_walltime.o ../../../testing/ptest/HPL_pddriver.o ../../../testing/ptest/HPL_pdinfo.o ../../../testing/ptest/HPL_pdtest.o ../../../../RandomAccess/MPIRandomAccess.o ../../../../RandomAccess/buckets.o ../../../../RandomAccess/core_single_cpu_lcg.o ../../../../RandomAccess/core_single_cpu.o ../../../../RandomAccess/heap.o ../../../../RandomAccess/pool.o ../../../../RandomAccess/single_cpu_lcg.o ../../../../RandomAccess/single_cpu.o ../../../../RandomAccess/star_single_cpu_lcg.o ../../../../RandomAccess/star_single_cpu.o ../../../../RandomAccess/time_bound.o ../../../../RandomAccess/utility.o ../../../../RandomAccess/verification_lcg.o ../../../../RandomAccess/verification.
 o ../../../../RandomAccess/MPIRandomAccess_vanilla.o ../../../../RandomAccess/MPIRandomAccess_opt.o ../../../../RandomAccess/MPIRandomAccessLCG.o ../../../../STREAM/onecpu.o ../../../../STREAM/stream.o ../../../../PTRANS/pmatgeninc.o ../../../../PTRANS/pdmatgen.o ../../../../PTRANS/pdtransdriver.o ../../../../PTRANS/pdmatcmp.o ../../../../PTRANS/pdtrans.o ../../../../PTRANS/sclapack.o ../../../../PTRANS/cblacslt.o ../../../../PTRANS/mem.o ../../../../src/bench_lat_bw_1.5.2.o ../../../../src/hpcc.o ../../../../src/io.o ../../../../src/extinit.o ../../../../src/extfinalize.o ../../../../src/HPL_slamch.o ../../../../src/noopt.o ../../../../DGEMM/tstdgemm.o ../../../../DGEMM/onecpu.o ../../../../FFT/bcnrand.o ../../../../FFT/fft235.o ../../../../FFT/zfft1d.o ../../../../FFT/pzfft1d.o ../../../../FFT/onecpu.o ../../../../FFT/tstfft.o ../../../../FFT/wrapfftw.o ../../../../FFT/wrapmpifftw.o ../../../../FFT/mpifft.o
ar: creating ../../../lib/Debian/libhpl.a
echo ../../../lib/Debian/libhpl.a
../../../lib/Debian/libhpl.a
mpicc  -DHPL_CALL_CBLAS -I../../../include -I../../../include/Debian   -fomit-frame-pointer -O3 -funroll-loops -W -Wall -o ../../../../hpcc ../../../lib/Debian/libhpl.a -lblas -latlas  -lm
/usr/bin/ld: ../../../../hpcc: hidden symbol `__canonicalize_funcptr_for_compare' in /usr/lib/gcc/hppa-linux-gnu/4.4.3/libgcc.a(fptr.o) is referenced by DSO
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: ld returned 1 exit status
mpicc: No such file or directory
make[2]: *** [../../../../hpcc] Error 1
make[2]: Leaving directory `/build/buildd-hpcc_1.4.0-2-hppa-eNTtLe/hpcc-1.4.0/hpl/lib/arch/build'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/build/buildd-hpcc_1.4.0-2-hppa-eNTtLe/hpcc-1.4.0'
make: *** [debian/stamp-makefile-build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2




Bug Marked as found in versions hpcc/1.4.1-1. Request was from dannf@ldl.fc.hp.com (dann frazier) to control@bugs.debian.org. (Fri, 13 Aug 2010 16:24:09 GMT) Full text and rfc822 format available.

Information forwarded to debian-bugs-dist@lists.debian.org, Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>:
Bug#592885; Package src:hpcc. (Sat, 14 Aug 2010 07:51:08 GMT) Full text and rfc822 format available.

Acknowledgement sent to Lucas Nussbaum <lucas@lucas-nussbaum.net>:
Extra info received and forwarded to list. Copy sent to Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>. (Sat, 14 Aug 2010 07:51:08 GMT) Full text and rfc822 format available.

Message #12 received at 592885@bugs.debian.org (full text, mbox):

From: Lucas Nussbaum <lucas@lucas-nussbaum.net>
To: dann frazier <dannf@debian.org>, 592885@bugs.debian.org
Subject: Re: Bug#592885: FTBFS [hppa]: final link failed: Nonrepresentable section on output
Date: Sat, 14 Aug 2010 09:29:56 +0200
On 13/08/10 at 10:15 -0600, dann frazier wrote:
> mpicc  -DHPL_CALL_CBLAS -I../../../include -I../../../include/Debian   -fomit-frame-pointer -O3 -funroll-loops -W -Wall -o ../../../../hpcc ../../../lib/Debian/libhpl.a -lblas -latlas  -lm
> /usr/bin/ld: ../../../../hpcc: hidden symbol `__canonicalize_funcptr_for_compare' in /usr/lib/gcc/hppa-linux-gnu/4.4.3/libgcc.a(fptr.o) is referenced by DSO
> /usr/bin/ld: final link failed: Nonrepresentable section on output
> collect2: ld returned 1 exit status

Since it built everywhere else, isn't that hppa-specific?

L.




Information forwarded to debian-bugs-dist@lists.debian.org, Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>:
Bug#592885; Package src:hpcc. (Tue, 24 Aug 2010 04:09:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to dann frazier <dannf@dannf.org>:
Extra info received and forwarded to list. Copy sent to Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>. (Tue, 24 Aug 2010 04:09:03 GMT) Full text and rfc822 format available.

Message #17 received at 592885@bugs.debian.org (full text, mbox):

From: dann frazier <dannf@dannf.org>
To: Lucas Nussbaum <lucas@lucas-nussbaum.net>
Cc: 592885@bugs.debian.org, control@bugs.debian.org
Subject: Re: Bug#592885: FTBFS [hppa]: final link failed: Nonrepresentable section on output
Date: Mon, 23 Aug 2010 22:05:21 -0600
reassign 592885 src:atlas
affects 592885 hpcc
affects 592885 openmeeg
thanks

On Sat, Aug 14, 2010 at 09:29:56AM +0200, Lucas Nussbaum wrote:
> On 13/08/10 at 10:15 -0600, dann frazier wrote:
> > mpicc  -DHPL_CALL_CBLAS -I../../../include -I../../../include/Debian   -fomit-frame-pointer -O3 -funroll-loops -W -Wall -o ../../../../hpcc ../../../lib/Debian/libhpl.a -lblas -latlas  -lm
> > /usr/bin/ld: ../../../../hpcc: hidden symbol `__canonicalize_funcptr_for_compare' in /usr/lib/gcc/hppa-linux-gnu/4.4.3/libgcc.a(fptr.o) is referenced by DSO
> > /usr/bin/ld: final link failed: Nonrepresentable section on output
> > collect2: ld returned 1 exit status
> 
> Since it built everywhere else, isn't that hppa-specific?

Looks like an issue with how libatlas is linked, so reassigning.
Investigation here:
  http://lists.debian.org/debian-hppa/2010/08/msg00032.html

-- 
dann frazier





Bug reassigned from package 'src:hpcc' to 'src:atlas'. Request was from dann frazier <dannf@dannf.org> to control@bugs.debian.org. (Tue, 24 Aug 2010 04:09:04 GMT) Full text and rfc822 format available.

Bug No longer marked as found in versions hpcc/1.4.1-1 and hpcc/1.4.0-2. Request was from dann frazier <dannf@dannf.org> to control@bugs.debian.org. (Tue, 24 Aug 2010 04:09:05 GMT) Full text and rfc822 format available.

Added indication that 592885 affects hpcc Request was from dann frazier <dannf@dannf.org> to control@bugs.debian.org. (Tue, 24 Aug 2010 04:09:06 GMT) Full text and rfc822 format available.

Removed indication that 592885 affects hpcc Added indication that 592885 affects openmeeg Request was from dann frazier <dannf@dannf.org> to control@bugs.debian.org. (Tue, 24 Aug 2010 04:09:06 GMT) Full text and rfc822 format available.

Added tag(s) sid and squeeze. Request was from Gerfried Fuchs <rhonda@debian.at> to control@bugs.debian.org. (Mon, 30 Aug 2010 13:06:06 GMT) Full text and rfc822 format available.

Information forwarded to debian-bugs-dist@lists.debian.org, Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>:
Bug#592885; Package src:atlas. (Mon, 20 Sep 2010 17:48:05 GMT) Full text and rfc822 format available.

Acknowledgement sent to Sylvestre Ledru <sylvestre@debian.org>:
Extra info received and forwarded to list. Copy sent to Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>. (Mon, 20 Sep 2010 17:48:05 GMT) Full text and rfc822 format available.

Message #32 received at 592885@bugs.debian.org (full text, mbox):

From: Sylvestre Ledru <sylvestre@debian.org>
To: 592885@bugs.debian.org, dann frazier <dannf@dannf.org>, Lucas Nussbaum <lucas@lucas-nussbaum.net>
Subject: hpcc under hppa: With atlas 3.8.3-27
Date: Mon, 20 Sep 2010 19:45:32 +0200
Hello,

Could you try with the release 3.8.3-27 to find out if this problem
occurs again ?

Thanks
Sylvestre






Information forwarded to debian-bugs-dist@lists.debian.org, Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>:
Bug#592885; Package src:atlas. (Mon, 20 Sep 2010 20:24:03 GMT) Full text and rfc822 format available.

Acknowledgement sent to dann frazier <dannf@debian.org>:
Extra info received and forwarded to list. Copy sent to Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>. (Mon, 20 Sep 2010 20:24:03 GMT) Full text and rfc822 format available.

Message #37 received at 592885@bugs.debian.org (full text, mbox):

From: dann frazier <dannf@debian.org>
To: Sylvestre Ledru <sylvestre@debian.org>
Cc: 592885@bugs.debian.org, Lucas Nussbaum <lucas@lucas-nussbaum.net>
Subject: Re: hpcc under hppa: With atlas 3.8.3-27
Date: Mon, 20 Sep 2010 14:20:32 -0600
On Mon, Sep 20, 2010 at 07:45:32PM +0200, Sylvestre Ledru wrote:
> Hello,
> 
> Could you try with the release 3.8.3-27 to find out if this problem
> occurs again ?

given back.

-- 
dann frazier





Severity set to 'important' from 'serious' Request was from Adam D. Barratt <adam@adam-barratt.org.uk> to control@bugs.debian.org. (Wed, 22 Sep 2010 18:21:03 GMT) Full text and rfc822 format available.

Added tag(s) wheezy. Request was from Kurt Roeckx <kurt@roeckx.be> to control@bugs.debian.org. (Wed, 16 Feb 2011 19:04:30 GMT) Full text and rfc822 format available.

Reply sent to Yaroslav Halchenko <debian@onerussian.com>:
You have taken responsibility. (Mon, 25 Jun 2012 17:03:10 GMT) Full text and rfc822 format available.

Notification sent to dann frazier <dannf@debian.org>:
Bug acknowledged by developer. (Mon, 25 Jun 2012 17:03:10 GMT) Full text and rfc822 format available.

Message #46 received at 592885-done@bugs.debian.org (full text, mbox):

From: Yaroslav Halchenko <debian@onerussian.com>
To: 592885-done@bugs.debian.org
Subject: since HPPA was discontinued
Date: Mon, 25 Jun 2012 12:58:48 -0400
no reason to drag this bug report along

-- 
Yaroslav O. Halchenko
Postdoctoral Fellow,   Department of Psychological and Brain Sciences
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        




Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Tue, 24 Jul 2012 07:33:14 GMT) Full text and rfc822 format available.

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