Debian Bug report logs - #569438
avogadro: FTBFS: sip.cpp:143: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Lucas Nussbaum <lucas@lucas-nussbaum.net>

To: submit@bugs.debian.org

Subject: avogadro: FTBFS: sip.cpp:143: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'

Date: Thu, 11 Feb 2010 19:44:40 +0100

Source: avogadro
Version: 1.0.0-2
Severity: serious
User: debian-qa@lists.debian.org
Usertags: qa-ftbfs-20100211 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[3]: Entering directory `/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 
> [ 76%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o
> cd /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/include -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0 -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/navigate.cpp.o -c /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/navigate.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 
> [ 76%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o
> cd /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/include -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0 -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/sip.cpp.o -c /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp: In static member function 'static PyObject* QClass_converters<T>::QClass_to_PyQt::convert(const T&)':
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp:143: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp: In static member function 'static PyObject* QClass_converters<T>::QClass_to_PyQt::convert(T*)':
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp:167: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp: In static member function 'static void* QClass_converters<T>::QClass_from_PyQt(PyObject*)':
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp:187: error: 'const struct sipAPIDef' has no member named 'api_wrapper_check'
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp:195: error: 'const struct sipAPIDef' has no member named 'api_transfer'
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp:205: error: 'struct sipWrapper' has no member named 'u'
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp: In static member function 'static PyObject* QList_QAction_to_python_list_PyQt::convert(const QList<QAction*>&)':
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp:245: error: 'const struct _sipAPIDef' has no member named 'api_convert_from_instance'
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp: In function 'PyObject* toPyQt(T*)':
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp:383: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h: At global scope:
> /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:40: warning: 'Avogadro::FALSE_ID' defined but not used
> make[3]: *** [libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o] Error 1

The full build log is available from:
   http://people.debian.org/~lucas/logs/2010/02/11/avogadro_1.0.0-2_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas@lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas@nussbaum.fr             GPG: 1024D/023B3F4F |

Message #10 received at 569438@bugs.debian.org (full text, mbox, reply):

From: Michael Banck <mbanck@debian.org>

To: 569438@bugs.debian.org

Subject: Re: [Debichem-devel] Bug#569438: avogadro: FTBFS: sip.cpp:143: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'

Date: Thu, 11 Feb 2010 23:27:06 +0100

forwarded 569438 https://sourceforge.net/tracker/?func=detail&aid=2950025&group_id=165310&atid=835077
thanks

On Thu, Feb 11, 2010 at 07:44:40PM +0100, Lucas Nussbaum wrote:
> During a rebuild of all packages in sid, your package failed to build on
> amd64.
> 
> Relevant part:
> > [ 76%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o
> > cd /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/include -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0 -I/build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/obj-x86_6
> 4-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/sip.cpp.o -c /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp
> > /build/user-avogadro_1.0.0-2-amd64-5t0Ufq/avogadro-1.0.0/libavogadro/src/python/sip.cpp: In static member function 'static PyObject* QClass_converters<T>::QClass_to_PyQt::convert(const T&)':

Gah, another sip4 release (4.10 this time), another build failure.  I've
forwarded it to the SF bug tracker.


Michael

Message #17 received at 569438-close@bugs.debian.org (full text, mbox, reply):

From: Michael Banck <mbanck@debian.org>

To: 569438-close@bugs.debian.org

Subject: Bug#569438: fixed in avogadro 1.0.0-3

Date: Sat, 20 Feb 2010 23:47:18 +0000

Source: avogadro
Source-Version: 1.0.0-3

We believe that the bug you reported is fixed in the latest version of
avogadro, which is due to be installed in the Debian FTP archive:

avogadro-data_1.0.0-3_all.deb
  to main/a/avogadro/avogadro-data_1.0.0-3_all.deb
avogadro_1.0.0-3.diff.gz
  to main/a/avogadro/avogadro_1.0.0-3.diff.gz
avogadro_1.0.0-3.dsc
  to main/a/avogadro/avogadro_1.0.0-3.dsc
avogadro_1.0.0-3_i386.deb
  to main/a/avogadro/avogadro_1.0.0-3_i386.deb
libavogadro-dev_1.0.0-3_i386.deb
  to main/a/avogadro/libavogadro-dev_1.0.0-3_i386.deb
libavogadro1_1.0.0-3_i386.deb
  to main/a/avogadro/libavogadro1_1.0.0-3_i386.deb
python-avogadro_1.0.0-3_i386.deb
  to main/a/avogadro/python-avogadro_1.0.0-3_i386.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 569438@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael Banck <mbanck@debian.org> (supplier of updated avogadro package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: RIPEMD160

Format: 1.8
Date: Sat, 20 Feb 2010 23:33:54 +0100
Source: avogadro
Binary: avogadro avogadro-data libavogadro1 libavogadro-dev python-avogadro
Architecture: source all i386
Version: 1.0.0-3
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Changed-By: Michael Banck <mbanck@debian.org>
Description: 
 avogadro   - Molecular Graphics and Modelling System
 avogadro-data - Molecular Graphics and Modelling System (Data Files)
 libavogadro-dev - Molecular Graphics and Modelling System (development files)
 libavogadro1 - Molecular Graphics and Modelling System (library)
 python-avogadro - Molecular Graphics and Modelling System (Python module)
Closes: 569438
Changes: 
 avogadro (1.0.0-3) unstable; urgency=low
 .
   [ Jordan Mantha ]
   * debian/python-avogadro.install: use wildcard to catch both site-packages
     and dist-packages python directories.
 .
   [ Michael Banck ]
   * debian/patches/sip_4.10_support.patch: New patch, recognize new SIP
     version, taken from upstream (closes: #569438).
Checksums-Sha1: 
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Checksums-Sha256: 
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Files: 
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 02cce7f4650bbe8d0b43371de95663d1 10982 science optional avogadro_1.0.0-3.diff.gz
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