Debian Bug report logs - #461510
RFP: treevolve -- simulation of evolution of DNA sequences

Package: wnpp; Maintainer for wnpp is wnpp@debian.org;

Reported by: Charles Plessy <charles-debian-nospam@plessy.org>

Date: Sat, 19 Jan 2008 04:09:02 UTC

Severity: wishlist

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Report forwarded to debian-bugs-dist@lists.debian.org, debian-devel@lists.debian.org, vdanjean@debian.org, debian-med@lists.debian.org, <wnpp@debian.org>, charles plessy <charles-debian-nospam@plessy.org>:
Bug#461510; Package wnpp. Full text and rfc822 format available.

Acknowledgement sent to Charles Plessy <charles-debian-nospam@plessy.org>:
New Bug report received and forwarded. Copy sent to debian-devel@lists.debian.org, vdanjean@debian.org, debian-med@lists.debian.org, <wnpp@debian.org>, charles plessy <charles-debian-nospam@plessy.org>. Full text and rfc822 format available.

Message #5 received at submit@bugs.debian.org (full text, mbox):

From: Charles Plessy <charles-debian-nospam@plessy.org>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: treevolve -- simulation of evolution of DNA sequences
Date: Sat, 19 Jan 2008 13:07:47 +0900
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

  Package name    : treevolve
  Version         : 1.3.2
  Upstream Author : Andrew Rambaut & Nick Grassly
  URL             : http://evolve.zoo.ox.ac.uk/software.html?id=Treevolve
  License         : Not found... will enquire.
  Programming Lang: C
  Description     : simulation of evolution of DNA sequences

 treevolve will simulate the evolution of DNA sequences under a
 coalescent model, which allows exponential population growth,
 population subdivision according to an island model, migration and
 recombination. In addition different periods of population dynamics
 can be enforced at different times. For example, a period of
 exponential growth can be followed by a period of stasis where the
 population is subdivided into demes. Multiple sets of such simulated
 sequence data can then be compared to sequence data sampled from a
 population of interest using suitable statistics, and various
 evolutionary hypotheses concerning the evolution of this population
 tested.
 .
 Citation: Population dynamics of HIV-1 inferred from gene sequences
 Grassly NC, Harvey PH & Holmes EC (1999) Genetics 151, 427-438.

The package is already ready: it was prepared by Vincent Danjean, who
offered it to the Debian-Med packaging team.

http://www-id.imag.fr/Laboratoire/Membres/Danjean_Vincent/deb.html#treevolve

Have a nice day,

--
Charles Plessy




Owner changed from charles plessy <charles-debian-nospam@plessy.org> to plessy@debian.org. Request was from Charles Plessy <plessy@debian.org> to control@bugs.debian.org. (Mon, 04 May 2009 07:42:16 GMT) Full text and rfc822 format available.

Information forwarded to debian-bugs-dist@lists.debian.org, wnpp@debian.org, plessy@debian.org:
Bug#461510; Package wnpp. (Tue, 25 May 2010 17:22:51 GMT) Full text and rfc822 format available.

Acknowledgement sent to Lucas Nussbaum <lucas@debian.org>:
Extra info received and forwarded to list. Copy sent to wnpp@debian.org, plessy@debian.org. (Tue, 25 May 2010 17:22:52 GMT) Full text and rfc822 format available.

Message #12 received at 461510@bugs.debian.org (full text, mbox):

From: Lucas Nussbaum <lucas@debian.org>
To: 461510@bugs.debian.org
Cc: control@bugs.debian.org
Subject: treevolve: changing back from ITP to RFP
Date: Tue, 25 May 2010 17:06:11 +0000
retitle 461510 RFP: treevolve -- simulation of evolution of DNA sequences
noowner 461510
thanks

Hi,

This is an automatic email to change the status of treevolve back from ITP
(Intent to Package) to RFP (Request for Package), because this bug hasn't seen
any activity during the last 12 months.

If you are still interested in adopting treevolve, please send a mail to
<control@bugs.debian.org> with:

 retitle 461510 ITP: treevolve -- simulation of evolution of DNA sequences
 owner 461510 !
 thanks

However, it is not recommended to keep ITP for a long time without acting on
the package, as it might cause other prospective maintainers to refrain from
packaging that software. It is also a good idea to document your progress on
this ITP from time to time, by mailing <461510@bugs.debian.org>.

Thank you for your interest in Debian,
-- 
Lucas, for the QA team <debian-qa@lists.debian.org>




Changed Bug title to 'RFP: treevolve -- simulation of evolution of DNA sequences' from 'ITP: treevolve -- simulation of evolution of DNA sequences' Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Tue, 25 May 2010 17:27:35 GMT) Full text and rfc822 format available.

Removed annotation that Bug was owned by plessy@debian.org. Request was from Lucas Nussbaum <lucas@debian.org> to control@bugs.debian.org. (Tue, 25 May 2010 17:27:35 GMT) Full text and rfc822 format available.

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