Debian Bug report logs - #460990
rasmol: Association between RasMol and PDB files.

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Charles Plessy <charles-debian-nospam@plessy.org>

To: Debian Bug Tracking System <submit@bugs.debian.org>

Subject: rasmol: Association between RasMol and PDB files.

Date: Wed, 16 Jan 2008 09:17:56 +0900

Package: rasmol
Version: 2.7.2.1.1-5
Severity: wishlist

Dear Teemu,

In order to have RasMol started when clicking on PDB files on
freedesktop.org compliant systems (GNOME, Xfce, KDE,…) the following
line has to be added the the debian/rasmol.desktop file:

MimeType=chemical/x-pdb

You can see it in PyMol's .desktop for instance:
http://svn.debian.org/wsvn/debichem/unstable/pymol/debian/pymol.desktop?op=file&rev=0&sc=0

(by the way, the tool `desktop-file-validate' will also warn you about
some errors in rasmol.desktop)

In order for the desktop environment to recognise the PDB files, it
will also need informations found in the chemical-mime-data
package. I would like to suggest that rasmol recommends this package, but
th following bug annoying: http://bugs.debian.org/420795

Please feel free to join our discussion about this on the Debian-Med
mailing list:

http://lists.debian.org/debian-med/2008/01/msg00093.html

Have a nice day,

-- 
Charles Plessy
Debian-Med packaging team
Wakō, Saitama, Japan

Message #10 received at 460990-close@bugs.debian.org (full text, mbox, reply):

From: Teemu Ikonen <tpikonen@gmail.com>

To: 460990-close@bugs.debian.org

Subject: Bug#460990: fixed in rasmol 2.7.4.2-1

Date: Mon, 26 May 2008 14:47:10 +0000

Source: rasmol
Source-Version: 2.7.4.2-1

We believe that the bug you reported is fixed in the latest version of
rasmol, which is due to be installed in the Debian FTP archive:

rasmol-doc_2.7.4.2-1_all.deb
  to pool/main/r/rasmol/rasmol-doc_2.7.4.2-1_all.deb
rasmol_2.7.4.2-1.diff.gz
  to pool/main/r/rasmol/rasmol_2.7.4.2-1.diff.gz
rasmol_2.7.4.2-1.dsc
  to pool/main/r/rasmol/rasmol_2.7.4.2-1.dsc
rasmol_2.7.4.2-1_i386.deb
  to pool/main/r/rasmol/rasmol_2.7.4.2-1_i386.deb
rasmol_2.7.4.2.orig.tar.gz
  to pool/main/r/rasmol/rasmol_2.7.4.2.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 460990@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Teemu Ikonen <tpikonen@gmail.com> (supplier of updated rasmol package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Mon, 26 May 2008 15:42:09 +0200
Source: rasmol
Binary: rasmol rasmol-doc
Architecture: source i386 all
Version: 2.7.4.2-1
Distribution: unstable
Urgency: low
Maintainer: Teemu Ikonen <tpikonen@gmail.com>
Changed-By: Teemu Ikonen <tpikonen@gmail.com>
Description: 
 rasmol     - Visualize biological macromolecules
 rasmol-doc - Documentation for rasmol
Closes: 442810 460990
Changes: 
 rasmol (2.7.4.2-1) unstable; urgency=low
 .
   * New upstream version
   * GTK changes included in upstream now
   * Update to standards-version 3.7.3
   * Add build-dependency to cbflib-dev
   * Patch Imakefile to use debianized cbflib
   * Configure what GUI to use by regenerating Makefiles from the Imakefile
     during package build
   * Update copyright to reflect the new upstream version
   * Add MimeType=chemical/x-pdb to .desktop files, also fix them to be
     "desktop-file-validate" clean (closes: #460990)
   * Fixed color handling in the GTK version (closes: #442810)
   * Add Vcs-* fields pointing to debian-science git repository
   * copyright: start conversion to machine readable format, convert to utf8
   * Fix lintian errors in rasmol manpage
Checksums-Sha1: 
 b1d00e3de7ae9477d2e33a6239e0aeb02e381e89 1246 rasmol_2.7.4.2-1.dsc
 fa50daba926a407d2ab340efacb16f6f6cdb6695 6000473 rasmol_2.7.4.2.orig.tar.gz
 d6e83b66f4e3a1b3880abd5145f3116ef3f69850 22760 rasmol_2.7.4.2-1.diff.gz
 510d6ff294e7fabaa2c5d7b798f7b020c64c3840 1281876 rasmol_2.7.4.2-1_i386.deb
 30f74a7c2873236f9331e24682ec91412d3d3d48 928832 rasmol-doc_2.7.4.2-1_all.deb
Checksums-Sha256: 
 521eda5e9e52526792e77bf219308b8bdc31babbbaec99e3d309757eed3d423b 1246 rasmol_2.7.4.2-1.dsc
 0b373014c6c307c70c4b702f29b1bbdcb53013a3bbeffb0cc6e33046af5200f3 6000473 rasmol_2.7.4.2.orig.tar.gz
 7a0d679441e7c5a42fbb07ecefe8f4a51b97dbb79709d6e4879d9ecb687843de 22760 rasmol_2.7.4.2-1.diff.gz
 0a7342f103eea3051a7d1e5693974b8522e98ca4d8f2b61d00b3c1fb8fd51092 1281876 rasmol_2.7.4.2-1_i386.deb
 5ecc8cbf11873663cc14b6c7d6b5ebdd42f26fc78bccec3a4099c3ca0215b01c 928832 rasmol-doc_2.7.4.2-1_all.deb
Files: 
 89f2951255e766c697bd8daac00b4239 1246 science optional rasmol_2.7.4.2-1.dsc
 70a96638ffc792f350a30a3184875fd2 6000473 science optional rasmol_2.7.4.2.orig.tar.gz
 ab38cd1a84979431e34a2bf54809d29f 22760 science optional rasmol_2.7.4.2-1.diff.gz
 ea66c620846aacdd1f81d39b48cbcffa 1281876 science optional rasmol_2.7.4.2-1_i386.deb
 6239c14c97263cb6edfa143e2702adbc 928832 doc optional rasmol-doc_2.7.4.2-1_all.deb

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