Debian Bug report logs - #439843
libxml2: Version 2.6.30.dfsg-1 breaks Azureus and evolution (until now)

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Jack Malmostoso <malmostoso@email.it>

To: submit@bugs.debian.org

Subject: libxml2: Version 2.6.30.dfsg-1 breaks Azureus and evolution (until now)

Date: Mon, 27 Aug 2007 22:47:26 +0200

Package: libxml2
Version: 2.6.30.dfsg-1
Severity: normal


Hello there,

I have just upgraded my Debian Sid system and Azureus does not work
anymore.
Steps to reproduce:

1) Install libxml2 version 2.6.30.dfsg-1
2) Open Azureus
3) Try loading a new .torrent file

Here is the output given when starting azureus from a terminal window:

jack@nostromo:~/Desktop$ /opt/azureus/azureus
Starting Azureus...
Java exec found in PATH. Verifying...
Suitable java version found [java = 1.5.0_06]
Configuring environment...
Loading Azureus:
java -Xms16m -Xmx128m -cp
"/opt/azureus/Azureus2.jar:/opt/azureus/swt.jar"
-Djava.library.path="/opt/azureus" -Dazureus.install.path="/opt/azureus"
org.gudy.azureus2.ui.swt.Main ''
[plug] [UPnP Core] 
Analysing /opt/azureus/hs_err_pid14840.log
DEBUG::Mon Aug 27 18:05:31 GMT+01:00
2007::com.aelitis.azureus.plugins.upnp.UPnPPlugin$8::log::504:
  java.net.BindException: Address already in use
        at java.net.PlainDatagramSocketImpl.bind0(Native Method)
        at java.net.PlainDatagramSocketImpl.bind(Unknown Source)
        at java.net.DatagramSocket.bind(Unknown Source)
        at java.net.MulticastSocket.<init>(Unknown Source)
        at java.net.MulticastSocket.<init>(Unknown Source)
        at

com.aelitis.net.udp.mc.impl.MCGroupImpl.processNetworkInterfaces(MCGroupImpl.java:241)
        at

com.aelitis.net.udp.mc.impl.MCGroupImpl.<init>(MCGroupImpl.java:125)
        at

com.aelitis.net.udp.mc.impl.MCGroupImpl.getSingleton(MCGroupImpl.java:76)
        at

com.aelitis.net.udp.mc.MCGroupFactory.getSingleton(MCGroupFactory.java:40)
        at
com.aelitis.net.upnp.impl.ssdp.SSDPCore.<init>(SSDPCore.java:120)
        at

com.aelitis.net.upnp.impl.ssdp.SSDPCore.getSingleton(SSDPCore.java:76)
        at

com.aelitis.net.upnp.impl.ssdp.SSDPIGDImpl.<init>(SSDPIGDImpl.java:62)
        at

com.aelitis.net.upnp.impl.SSDPIGDFactory.create(SSDPIGDFactory.java:44)
        at com.aelitis.net.upnp.impl.UPnPImpl.<init>(UPnPImpl.java:113)
        at
com.aelitis.net.upnp.impl.UPnPImpl.getSingleton(UPnPImpl.java:71)
        at

com.aelitis.net.upnp.UPnPFactory.getSingleton(UPnPFactory.java:44)
        at

com.aelitis.azureus.plugins.upnp.UPnPPlugin.startUp(UPnPPlugin.java:438)
        at
        com.aelitis.azureus.plugins.upnp.UPnPPlugin
$7.initializationComplete(UPnPPlugin.java:317)
        at

org.gudy.azureus2.pluginsimpl.local.PluginInterfaceImpl.initialisationComplete(PluginInterfaceImpl.java:602)
        at

org.gudy.azureus2.pluginsimpl.local.PluginInitializer.initialisationComplete(PluginInitializer.java:1510)
        at
        com.aelitis.azureus.core.impl.AzureusCoreImpl
$6.runSupport(AzureusCoreImpl.java:607)
        at org.gudy.azureus2.core3.util.AEThread.run(AEThread.java:69)


(SWT:14993): Gtk-WARNING **: gtk_widget_size_allocate(): attempt to
allocate
widget with width 250 and height -1
#
# An unexpected error has been detected by HotSpot Virtual Machine:
#
#  SIGSEGV (0xb) at pc=0x00002aaab81570c5, pid=14993, tid=47607194598128
#
# Java VM: Java HotSpot(TM) 64-Bit Server VM (1.5.0_06-b05 mixed mode)
# Problematic frame:
# C  [libxml2.so.2+0x5b0c5]  __xmlParserInputBufferCreateFilename+0xe5
#
# An error report file with more information is saved as
hs_err_pid14993.log
#
# If you would like to submit a bug report, please visit:
#   http://java.sun.com/webapps/bugreport/crash.jsp
#
/opt/azureus/azureus: line 107: 14993 Aborted
/${JAVA_PROGRAM_DIR}java -Xms16m -Xmx128m -cp "${CLASSPATH}"
/-Djava.library.path="${PROGRAM_DIR}"
/-Dazureus.install.path="${PROGRAM_DIR}" org.gudy.azureus2.ui.swt.Main
"$@"
Azureus TERMINATED.

The mentioned file "hs_err_pid14993.log" is *extremely* long and I don't
want to clutter this report. If you think it's relevant, I'll attach it.

Upgrading to java 1.6 does not solve the issue.

Same thing with Evolution: when I start it, the window comes up but it
just crashes. No useful output in the window.

Reverting to 2.6.29 fixes both issues.

Thanks for any help!

-- System Information:
Debian Release: lenny/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.22-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages libxml2 depends on:
ii  libc6                   2.6.1-1          GNU C Library: Shared
libraries
ii  zlib1g                  1:1.2.3.3.dfsg-5 compression library -
runtime

Versions of packages libxml2 recommends:
ii  xml-core                      0.11       XML infrastructure and XML
catalog

-- no debconf information
-- 
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nobody's business but my own. -- Taj Mahal

 
 
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Message #10 received at 439843@bugs.debian.org (full text, mbox, reply):

From: Mike Hommey <mh@glandium.org>

To: Jack Malmostoso <malmostoso@email.it>, 439843@bugs.debian.org

Subject: Re: [xml/sgml-pkgs] Bug#439843: libxml2: Version 2.6.30.dfsg-1 breaks Azureus and evolution (until now)

Date: Tue, 28 Aug 2007 07:22:09 +0200

On Mon, Aug 27, 2007 at 10:47:26PM +0200, Jack Malmostoso <malmostoso@email.it> wrote:
> Package: libxml2
> Version: 2.6.30.dfsg-1
> Severity: normal
<snip>
> Same thing with Evolution: when I start it, the window comes up but it
> just crashes. No useful output in the window.
> 
> Reverting to 2.6.29 fixes both issues.

Please install the libxml2-dbg package. Once installed, please run "gdb
evolution" and type "run" at the prompt. Once evolution crashes, and you
get back to the prompt, please type "bt full" and send what it displays.

Thanks

Mike

Message #15 received at 439843@bugs.debian.org (full text, mbox, reply):

From: Jack Malmostoso <malmostoso@email.it>

To: Mike Hommey <mh@glandium.org>

Cc: 439843@bugs.debian.org

Subject: Re: [xml/sgml-pkgs] Bug#439843: libxml2: Version 2.6.30.dfsg-1 breaks Azureus and evolution (until now)

Date: Tue, 28 Aug 2007 08:20:03 +0200

On Tue, 2007-08-28 at 07:22 +0200, Mike Hommey wrote:
> Please install the libxml2-dbg package. Once installed, please run "gdb
> evolution" and type "run" at the prompt. Once evolution crashes, and you
> get back to the prompt, please type "bt full" and send what it displays.

Hello Mike,

thank you for the quick answer. Here is the output you require:

jack@nostromo:~$ gdb evolution
GNU gdb 6.6-debian
Copyright (C) 2006 Free Software Foundation, Inc.
GDB is free software, covered by the GNU General Public License, and you
are
welcome to change it and/or distribute copies of it under certain
conditions.
Type "show copying" to see the conditions.
There is absolutely no warranty for GDB.  Type "show warranty" for
details.
This GDB was configured as "x86_64-linux-gnu"...
(no debugging symbols found)
Using host libthread_db library "/lib/libthread_db.so.1".
(gdb) run
Starting program: /usr/bin/evolution 
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
---Type <return> to continue, or q <return> to quit---
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
[Thread debugging using libthread_db enabled]
[New Thread 47894040743872 (LWP 6178)]
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
/home/jack/.themes/Clearlooks-gperfection2/gtk-2.0/gtkrc:52: Clearlooks
configuration option "menuitemstyle" is not supported and will be
ignored.
/home/jack/.themes/Clearlooks-gperfection2/gtk-2.0/gtkrc:53: Clearlooks
configuration option "listviewitemstyle" is not supported and will be
ignored.
/home/jack/.themes/Clearlooks-gperfection2/gtk-2.0/gtkrc:54: Clearlooks
configuration option "progressbarstyle" is not supported and will be
ignored.
evolution-shell-Message: Killing old version of evolution-data-server...
[New Thread 1082132816 (LWP 6203)]
[Thread 1082132816 (LWP 6203) exited]
[New Thread 1082132816 (LWP 6204)]
libnm_glib_nm_state_cb: dbus returned an error.
  (org.freedesktop.DBus.Error.ServiceUnknown) The name
org.freedesktop.NetworkManager was not provided by any .service files
[New Thread 1090525520 (LWP 6209)]
[New Thread 1098918224 (LWP 6229)]

Program received signal SIGSEGV, Segmentation fault.
---Type <return> to continue, or q <return> to quit---
[Switching to Thread 47894040743872 (LWP 6178)]
__xmlParserInputBufferCreateFilename (
    URI=0x2aaaac00f070
"/home/jack/.evolution/mail/config/et-expanded-mbox:_home_jack_.evolution_mail_local#Inbox_malmostoso@email.it", 
    enc=XML_CHAR_ENCODING_NONE) at xmlIO.c:2408
2408    xmlIO.c: No such file or directory.
        in xmlIO.c
(gdb) bt full
#0  __xmlParserInputBufferCreateFilename (
    URI=0x2aaaac00f070
"/home/jack/.evolution/mail/config/et-expanded-mbox:_home_jack_.evolution_mail_local#Inbox_malmostoso@email.it", 
    enc=XML_CHAR_ENCODING_NONE) at xmlIO.c:2408
        ret = (xmlParserInputBufferPtr) 0x2aaaac00aae0
        i = 1
        context = (void *) 0xffffffffac010cc0
#1  0x00002b8f2bb22c6b in xmlNewInputFromFile__internal_alias (
    ctxt=0x2aaaac01c960, 
    filename=0x2aaaac00f070
"/home/jack/.evolution/mail/config/et-expanded-mbox:_home_jack_.evolution_mail_local#Inbox_malmostoso@email.it")
    at parserInternals.c:1450
        buf = <value optimized out>
        inputStream = (xmlParserInputPtr) 0x0
        directory = <value optimized out>
        URI = <value optimized out>
#2  0x00002b8f2bb25894 in xmlCreateURLParserCtxt__internal_alias (
    filename=0x2aaaac00f070
"/home/jack/.evolution/mail/config/et-expanded-mbox:_home_jack_.evolution_mail_local#Inbox_malmostoso@email.it", options=0)
    at parser.c:12263
        ctxt = (xmlParserCtxtPtr) 0x2aaaac01c960
        inputStream = <value optimized out>
        directory = <value optimized out>
---Type <return> to continue, or q <return> to quit---
#3  0x00002b8f2bb3b31d in xmlSAXParseFileWithData__internal_alias
(sax=0x0, 
    filename=0x2aaaac00f070
"/home/jack/.evolution/mail/config/et-expanded-mbox:_home_jack_.evolution_mail_local#Inbox_malmostoso@email.it", recovery=0, 
    data=0x0) at parser.c:12323
        ret = (xmlDocPtr) 0x0
        ctxt = <value optimized out>
        directory = <value optimized out>
#4  0x00002b8f270e617d in e_tree_table_adapter_load_expanded_state ()
   from /usr/lib/evolution/2.10/libetable.so.0
No symbol table info available.
#5  0x00002b8f352e76a5 in message_list_set_folder ()
   from /usr/lib/evolution/2.10/components/libevolution-mail.so
No symbol table info available.
#6  0x00002b8f352b1691 in ?? ()
   from /usr/lib/evolution/2.10/components/libevolution-mail.so
No symbol table info available.
#7  0x00002b8f352a31ce in ?? ()
   from /usr/lib/evolution/2.10/components/libevolution-mail.so
No symbol table info available.
#8  0x00002b8f352d83b2 in ?? ()
   from /usr/lib/evolution/2.10/components/libevolution-mail.so
No symbol table info available.
#9  0x00002b8f2ef66d93 in g_main_context_dispatch ()
---Type <return> to continue, or q <return> to quit---
   from /usr/lib/libglib-2.0.so.0
No symbol table info available.
#10 0x00002b8f2ef6a08d in ?? () from /usr/lib/libglib-2.0.so.0
No symbol table info available.
#11 0x00002b8f2ef6a39a in g_main_loop_run ()
from /usr/lib/libglib-2.0.so.0
No symbol table info available.
#12 0x00002b8f2a8bff15 in bonobo_main () from /usr/lib/libbonobo-2.so.0
No symbol table info available.
#13 0x0000000000418062 in main ()
No symbol table info available.
(gdb) quit
The program is running.  Exit anyway? (y or n) y

I hope it's helpful. Just ask for any additional test you require!

-- 
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note that people have changed the main topic of conversation. From mud
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Message #20 received at 439843@bugs.debian.org (full text, mbox, reply):

From: Noèl Köthe <noel@debian.org>

To: 439843@bugs.debian.org

Cc: control@bugs.debian.org, pkg-evolution-maintainers@lists.alioth.debian.org

Subject: #439843 libxml2 2.6.30.dfsg-1 breaks evolution

Date: Tue, 28 Aug 2007 13:47:06 +0200

[Message part 1 (text/plain, inline)]

severity 439843 important
thanks

Hello,

I can confirm the reported problem #439843.
Downgrading libxml2 fixed it for me.

CC: evolution maintainers so they know about this problem if they got
bug reports about this.

-- 
Noèl Köthe <noel debian.org>
Debian GNU/Linux, www.debian.org

[signature.asc (application/pgp-signature, inline)]

Message #27 received at 439843@bugs.debian.org (full text, mbox, reply):

From: Mike Hommey <mh@glandium.org>

To: Jack Malmostoso <malmostoso@email.it>

Cc: 439843@bugs.debian.org

Subject: Re: [xml/sgml-pkgs] Bug#439843: libxml2: Version 2.6.30.dfsg-1 breaks Azureus and evolution (until now)

Date: Tue, 28 Aug 2007 19:56:44 +0200

On Tue, Aug 28, 2007 at 08:20:03AM +0200, Jack Malmostoso <malmostoso@email.it> wrote:
> (gdb) bt full
> #0  __xmlParserInputBufferCreateFilename (
>     URI=0x2aaaac00f070
> "/home/jack/.evolution/mail/config/et-expanded-mbox:_home_jack_.evolution_mail_local#Inbox_malmostoso@email.it", 
>     enc=XML_CHAR_ENCODING_NONE) at xmlIO.c:2408
>         ret = (xmlParserInputBufferPtr) 0x2aaaac00aae0
>         i = 1
>         context = (void *) 0xffffffffac010cc0

That seems to indicate something cheesy with the new handling of LFS in
the zlib... libxml2 now uses gzopen64 while previous version used
gzopen, and the result seems rather strange, at least on x86_64...

I'll try to check this out.

Mike

Message #34 received at 439843@bugs.debian.org (full text, mbox, reply):

From: Mike Hommey <mh@glandium.org>

To: Jack Malmostoso <malmostoso@email.it>

Cc: 439843@bugs.debian.org, 439880-submitter@bugs.debian.org, 439945-submitter@bugs.debian.org

Subject: Re: [xml/sgml-pkgs] Bug#439843: libxml2: Version 2.6.30.dfsg-1 breaks Azureus and evolution (until now)

Date: Tue, 28 Aug 2007 20:58:03 +0200

On Tue, Aug 28, 2007 at 07:56:44PM +0200, Mike Hommey <mh@glandium.org> wrote:
> On Tue, Aug 28, 2007 at 08:20:03AM +0200, Jack Malmostoso <malmostoso@email.it> wrote:
> > (gdb) bt full
> > #0  __xmlParserInputBufferCreateFilename (
> >     URI=0x2aaaac00f070
> > "/home/jack/.evolution/mail/config/et-expanded-mbox:_home_jack_.evolution_mail_local#Inbox_malmostoso@email.it", 
> >     enc=XML_CHAR_ENCODING_NONE) at xmlIO.c:2408
> >         ret = (xmlParserInputBufferPtr) 0x2aaaac00aae0
> >         i = 1
> >         context = (void *) 0xffffffffac010cc0
> 
> That seems to indicate something cheesy with the new handling of LFS in
> the zlib... libxml2 now uses gzopen64 while previous version used
> gzopen, and the result seems rather strange, at least on x86_64...
> 
> I'll try to check this out.

Mmmmm it seems cheesier than that... I can't even reproduce...

Could one of the people having the crashes could try to reproduce with
xmllint, that would be helpful. (try a simple xmllint any_random_xml_file)

Thanks

Mike

Message #47 received at 439843@bugs.debian.org (full text, mbox, reply):

From: "Anton T" <terraxel@gmail.com>

To: 439843@bugs.debian.org

Date: Wed, 29 Aug 2007 00:42:14 +0400

I've experienced same crashes:

libxml2/2.6.30.dfsg-1 + evolution -> intermittent crashes when reading emails
libxml2/2.6.30.dfsg-1 + azureus + sun-java5-jre|sun-java6-jre ->
always crashes on startup
libxml2/2.6.30.dfsg-1 + azureus + java-gcj-compat/1.0.76-2 -> doesn't crash
libxml2/2.6.29.dfsg-1 + azureus + any jre -> doesn't crash

xmllint(from libxml2-utils ver 2.6.30.dfsg-1) doesn't seem to crash..
at least I can't find suitable xml..

Message #64 received at 439843-close@bugs.debian.org (full text, mbox, reply):

From: Mike Hommey <glandium@debian.org>

To: 439843-close@bugs.debian.org

Subject: Bug#439843: fixed in libxml2 2.6.30.dfsg-2

Date: Wed, 29 Aug 2007 17:17:03 +0000

Source: libxml2
Source-Version: 2.6.30.dfsg-2

We believe that the bug you reported is fixed in the latest version of
libxml2, which is due to be installed in the Debian FTP archive:

libxml2-dbg_2.6.30.dfsg-2_i386.deb
  to pool/main/libx/libxml2/libxml2-dbg_2.6.30.dfsg-2_i386.deb
libxml2-dev_2.6.30.dfsg-2_i386.deb
  to pool/main/libx/libxml2/libxml2-dev_2.6.30.dfsg-2_i386.deb
libxml2-doc_2.6.30.dfsg-2_all.deb
  to pool/main/libx/libxml2/libxml2-doc_2.6.30.dfsg-2_all.deb
libxml2-utils_2.6.30.dfsg-2_i386.deb
  to pool/main/libx/libxml2/libxml2-utils_2.6.30.dfsg-2_i386.deb
libxml2_2.6.30.dfsg-2.diff.gz
  to pool/main/libx/libxml2/libxml2_2.6.30.dfsg-2.diff.gz
libxml2_2.6.30.dfsg-2.dsc
  to pool/main/libx/libxml2/libxml2_2.6.30.dfsg-2.dsc
libxml2_2.6.30.dfsg-2_i386.deb
  to pool/main/libx/libxml2/libxml2_2.6.30.dfsg-2_i386.deb
python-libxml2_2.6.30.dfsg-2_i386.deb
  to pool/main/libx/libxml2/python-libxml2_2.6.30.dfsg-2_i386.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 439843@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Mike Hommey <glandium@debian.org> (supplier of updated libxml2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.7
Date: Tue, 28 Aug 2007 21:52:30 +0200
Source: libxml2
Binary: python-libxml2 libxml2-dbg libxml2-utils libxml2-doc libxml2-dev libxml2
Architecture: source i386 all
Version: 2.6.30.dfsg-2
Distribution: unstable
Urgency: low
Maintainer: Debian XML/SGML Group <debian-xml-sgml-pkgs@lists.alioth.debian.org>
Changed-By: Mike Hommey <glandium@debian.org>
Description: 
 libxml2    - GNOME XML library
 libxml2-dbg - Debugging symbols for the GNOME XML library
 libxml2-dev - Development files for the GNOME XML library
 libxml2-doc - Documentation for the GNOME XML library
 libxml2-utils - XML utilities
 python-libxml2 - Python bindings for the GNOME XML library
Closes: 439843
Changes: 
 libxml2 (2.6.30.dfsg-2) unstable; urgency=low
 .
   * libxml.h: define _LARGEFILE64_SOURCE to properly get gzopen64 defines in
     zlib.h. Closes: #439843. Thanks Dann Frazier.
Files: 
 a8b1de11d30c1277816c1d0f801a82a5 893 libs optional libxml2_2.6.30.dfsg-2.dsc
 142a40a06a46bf4874c9b31b0978d7b5 172141 libs optional libxml2_2.6.30.dfsg-2.diff.gz
 3676f02b1b5eed7871409746670508b5 1299244 doc optional libxml2-doc_2.6.30.dfsg-2_all.deb
 041f6da9e2378a77f0a7f0db093018be 766054 libs optional libxml2_2.6.30.dfsg-2_i386.deb
 d1155fa3c93b4e101570da9d81df29a1 34008 text optional libxml2-utils_2.6.30.dfsg-2_i386.deb
 fc7d186161398c60064b14c1c148fc69 671970 libdevel optional libxml2-dev_2.6.30.dfsg-2_i386.deb
 3e0eaf082f762e21f1fd55f5d8f6f4a9 852724 libdevel extra libxml2-dbg_2.6.30.dfsg-2_i386.deb
 9e09be7a1032c14f87c5998128d9633a 262600 python optional python-libxml2_2.6.30.dfsg-2_i386.deb

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