Debian Bug report logs - #241146
bioperl: Bioperl 1.4, new upstream version

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Package: bioperl; Maintainer for bioperl is Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>; Source for bioperl is src:bioperl.

Reported by: "D. Joe Anderson" <deejoe@etrumeus.com>

Date: Tue, 30 Mar 2004 23:48:09 UTC

Severity: wishlist

Found in version 1.0-1

Done: Charles Plessy <charles-debian-nospam@plessy.org>

Bug is archived. No further changes may be made.

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Report forwarded to Matt Hope <matth@bioinformatics.unsw.edu.au>:
Bug#241146; Package bioperl. Full text and rfc822 format available.

Acknowledgement sent to "D. Joe Anderson" <deejoe@etrumeus.com>:
New Bug report received and forwarded. Copy sent to Matt Hope <matth@bioinformatics.unsw.edu.au>. Full text and rfc822 format available.

Message #5 received at maintonly@bugs.debian.org (full text, mbox):

From: "D. Joe Anderson" <deejoe@etrumeus.com>
To: Debian Bug Tracking System <maintonly@bugs.debian.org>
Subject: bioperl: Bioperl 1.4, new upstream version
Date: Tue, 30 Mar 2004 17:39:02 -0600
Package: bioperl
Version: 1.0-1
Severity: wishlist



-- System Information
Debian Release: 3.0
Architecture: i386
Kernel: Linux fivepoundbass 2.4.23-1-k7 #1 Wed Dec 3 15:46:13 CET 2003 i686
Locale: LANG=C, LC_CTYPE=C

Versions of packages bioperl depends on:
ii  libgd-perl                    1.38-5     Perl module wrapper for libgd
ii  libsoap-lite-perl             0.55-1     Perl5 modules for client and serve
ii  libstorable-perl              1.0.14-1   Storable extension for Perl5
ii  perl                          5.6.1-8.6  Larry Wall's Practical Extraction 
ii  readseq                       1-3        [Biology] Conversion between seque

System details are for my home machine running woody and aren't
necessarily applicable for NUV.

Version presently in testing and unstable is 1.2

Upstream of 1.4 is avaiable from

 http://www.cpan.org/authors/id/B/BI/BIRNEY/bioperl-run-1.4.tar.gz

It was announced here:

 http://portal.open-bio.org/pipermail/bioperl-announce-l/2003-December/000213.html

It has been requested for Debian on the upstream mailing list:

 http://portal.open-bio.org/pipermail/bioperl-l/2004-March/015187.html





Information forwarded to debian-bugs-dist@lists.debian.org, Matt Hope <matth@bioinformatics.unsw.edu.au>:
Bug#241146; Package bioperl. Full text and rfc822 format available.

Acknowledgement sent to Matt Hope <matth@unsw.edu.au>:
Extra info received and forwarded to list. Copy sent to Matt Hope <matth@bioinformatics.unsw.edu.au>. Full text and rfc822 format available.

Message #10 received at 241146@bugs.debian.org (full text, mbox):

From: Matt Hope <matth@unsw.edu.au>
To: "D. Joe Anderson" <deejoe@iastate.edu>
Cc: bioperl-l@portal.open-bio.org, 241146@bugs.debian.org
Subject: Re: [Bioperl-l] Bioperl 1.4 on Debian
Date: Tue, 20 Apr 2004 18:55:37 +1000
On Wed, 2004-03-31 at 10:24, D. Joe Anderson wrote:

> I've filed a wishlist bug against the Debian bioperl package, in hopes that
> the Debian maintainer can find the time to get 1.4 in:
> 
> http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=241146
> 
> What would be especially sweet is if it makes it into sarge before it goes
> stable.

Thanks for (forcibly) bringing this to my attention. I was working on an
updated package before. I'll have a sample ready, available for testing,
on http://debian.bioinformatics.unsw.edu.au/ 
[ Most likely
http://debian.bioinformatics.unsw.edu.au/pool/main/b/bioperl/ ]

later this evening.

-- 
Matt Hope <matth@unsw.edu.au>
Bioinformatics System Administrator
University of New South Wales



Reply sent to charles-debian-nospam@plessy.org:
You have taken responsibility. Full text and rfc822 format available.

Notification sent to "D. Joe Anderson" <deejoe@etrumeus.com>:
Bug acknowledged by developer. Full text and rfc822 format available.

Message #15 received at 241146-done@bugs.debian.org (full text, mbox):

From: Charles Plessy <charles-debian-nospam@plessy.org>
To: 241146-done@bugs.debian.org
Subject: Bioperl 1.4.0 is available in Debian.
Date: Fri, 15 Jun 2007 14:12:25 +0900
I am closing this bug because the latest stable version, 1.4.0, is
available in Debian. For the people interested, a 1.5.2 package will
soon be uploaded in experimental.

-- 
Charles Plessy
http://charles.plessy.org
Wako, Saitama, Japan



Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Fri, 13 Jul 2007 07:47:08 GMT) Full text and rfc822 format available.

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