Debian Bug report logs - #1068349
nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Toggle useless messages

Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: "Rebecca N. Palmer" <rebecca_palmer@zoho.com>

To: submit@bugs.debian.org

Subject: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Wed, 3 Apr 2024 23:09:11 +0100

Package: python3-nbconvert,python3-lxml
Version: 6.5.3-4,5.2.0-1
Control: affects -1 src:pandas
Control: affects -1 python3-nbsphinx
Control: block 1068104 by -1

The pandas documentation fails to build in current unstable with:

Running Sphinx v7.2.6
nbconvert not installed. Skipping notebooks.
Extension error:
Could not import extension nbsphinx (exception: lxml.html.clean module 
is now a separate project lxml_html_clean.
Install lxml[html_clean] or lxml_html_clean directly.)

Full log: https://salsa.debian.org/science-team/pandas/-/jobs/5538806

This probably makes nbconvert and nbsphinx fail to import at all, and 
started when lxml was upgraded to 5.2, but I haven't actually tested 
either of those:
https://sources.debian.org/src/nbconvert/6.5.3-4/nbconvert/exporters/templateexporter.py/?hl=25#L25
https://sources.debian.org/src/lxml/5.2.0-1/PKG-INFO/?hl=83#L83

The obvious fix would be to package lxml_html_clean.

Message #16 received at 1068349@bugs.debian.org (full text, mbox, reply):

From: Matthias Klose <doko@debian.org>

To: "Rebecca N. Palmer" <rebecca_palmer@zoho.com>, 1068349@bugs.debian.org

Subject: Re: Bug#1068349: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Thu, 4 Apr 2024 00:45:30 +0200

On 04.04.24 00:09, Rebecca N. Palmer wrote:
> Package: python3-nbconvert,python3-lxml
> Version: 6.5.3-4,5.2.0-1
> Control: affects -1 src:pandas
> Control: affects -1 python3-nbsphinx
> Control: block 1068104 by -1
> 
> The pandas documentation fails to build in current unstable with:
> 
> Running Sphinx v7.2.6
> nbconvert not installed. Skipping notebooks.
> Extension error:
> Could not import extension nbsphinx (exception: lxml.html.clean module 
> is now a separate project lxml_html_clean.
> Install lxml[html_clean] or lxml_html_clean directly.)
> 
> Full log: https://salsa.debian.org/science-team/pandas/-/jobs/5538806
> 
> This probably makes nbconvert and nbsphinx fail to import at all, and 
> started when lxml was upgraded to 5.2, but I haven't actually tested 
> either of those:
> https://sources.debian.org/src/nbconvert/6.5.3-4/nbconvert/exporters/templateexporter.py/?hl=25#L25
> https://sources.debian.org/src/lxml/5.2.0-1/PKG-INFO/?hl=83#L83
> 
> The obvious fix would be to package lxml_html_clean.

xml-html-clean is in NEW

Message #21 received at 1068349@bugs.debian.org (full text, mbox, reply):

From: "Rebecca N. Palmer" <rebecca_palmer@zoho.com>

To: 1068349@bugs.debian.org

Subject: Re: Bug#1068349: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Thu, 4 Apr 2024 07:45:01 +0100

Control: tags -1 patch
Control: severity -1 serious
(probably makes nbconvert/nbsphinx unusable)

> xml-html-clean is in NEWhttps://ftp-master.debian.org/new/lxml-html-clean_0.1.0-1.html

Thanks - that and adding it to the Depends of python3-nbconvert should 
fix this bug.

From codesearch, other packages that may need such a Depends are 
html-text, extruct, python-html-sanitizer, napari, readability, calibre, 
python-webob.

Message #42 received at 1068349@bugs.debian.org (full text, mbox, reply):

From: "Rebecca N. Palmer" <rebecca_palmer@zoho.com>

To: 1068349@bugs.debian.org, Antonio Valentino <antonio.valentino@tiscali.it>

Subject: Re: Bug#1068349: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Sun, 7 Apr 2024 22:06:05 +0100

Control: unblock 1068104 by -1
Control: unblock 1068104 by 1068422

To avoid being blocked by this bug, the pandas version I just uploaded 
temporarily disables the documentation.

This is also an option for any other affected packages that urgently 
need to be uploaded.  (I don't know whether the other two listed 
Blocks/Affects are that urgent.)

Message #47 received at 1068349-submitter@bugs.debian.org (full text, mbox, reply):

From: Colin Watson <cjwatson@debian.org>

To: 1068349-submitter@bugs.debian.org

Subject: Bug#1068349 marked as pending in nbconvert

Date: Sun, 14 Apr 2024 15:52:34 +0000

Control: tag -1 pending

Hello,

Bug #1068349 in nbconvert reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/python-team/packages/nbconvert/-/commit/7131b104d389851c2a15996362f2088319ca46ff

------------------------------------------------------------------------
(Build-)depend on python3-lxml-html-clean

Closes: #1068349
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1068349

Message #54 received at 1068349-close@bugs.debian.org (full text, mbox, reply):

From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>

To: 1068349-close@bugs.debian.org

Subject: Bug#1068349: fixed in nbconvert 6.5.3-5

Date: Sun, 14 Apr 2024 16:06:33 +0000

[Message part 1 (text/plain, inline)]

Source: nbconvert
Source-Version: 6.5.3-5
Done: Colin Watson <cjwatson@debian.org>

We believe that the bug you reported is fixed in the latest version of
nbconvert, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1068349@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Colin Watson <cjwatson@debian.org> (supplier of updated nbconvert package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sun, 14 Apr 2024 16:52:34 +0100
Source: nbconvert
Architecture: source
Version: 6.5.3-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Team <team+python@tracker.debian.org>
Changed-By: Colin Watson <cjwatson@debian.org>
Closes: 1042699 1068349
Changes:
 nbconvert (6.5.3-5) unstable; urgency=medium
 .
   * Team upload.
   * Updates for sphinx 5.0 support (closes: #1042699).
   * (Build-)depend on python3-lxml-html-clean (closes: #1068349).
Checksums-Sha1:
 83cc37d2a0f7a1979a862869b62cc502f86358e1 2972 nbconvert_6.5.3-5.dsc
 55e82c081dcdf9c9bea59cb8bc5379789a357a8d 86536 nbconvert_6.5.3-5.debian.tar.xz
Checksums-Sha256:
 3642373c3a225b0dcbcc0d3e7f9b80b21f626b3c3d3817747fd4d4961482b5ba 2972 nbconvert_6.5.3-5.dsc
 f43c78019d609977bfa1bd4e5d065a14527d1b804e943286fe400898834b0682 86536 nbconvert_6.5.3-5.debian.tar.xz
Files:
 7c728d6bd7bf4f3f80fd6389ba6ce279 2972 python optional nbconvert_6.5.3-5.dsc
 e6283e1433e5ac30135e5151feb50787 86536 python optional nbconvert_6.5.3-5.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=TW4n
-----END PGP SIGNATURE-----

[Message part 2 (application/pgp-signature, inline)]

Message #59 received at 1068349@bugs.debian.org (full text, mbox, reply):

From: Vincent Lefevre <vincent@vinc17.net>

To: "Rebecca N. Palmer" <rebecca_palmer@zoho.com>, 1068349@bugs.debian.org

Cc: Antonio Valentino <antonio.valentino@tiscali.it>

Subject: Re: Bug#1068349: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Tue, 7 May 2024 11:25:05 +0200

On 2024-04-07 22:06:05 +0100, Rebecca N. Palmer wrote:
> To avoid being blocked by this bug, the pandas version I just uploaded
> temporarily disables the documentation.
> 
> This is also an option for any other affected packages that urgently need to
> be uploaded.  (I don't know whether the other two listed Blocks/Affects are
> that urgent.)

What's the status of this bug?

apt-listbugs still reports python3-lxml as buggy:

serious bugs of python3-lxml (5.1.0-1 → 5.2.1-1) <Resolved in some Version>
 b1 - #1068349 - nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean (Fixed: nbconvert/6.5.3-5)
Summary:
 python3-lxml(1 bug)

Indeed, https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1068349
says: "Found in versions nbconvert/6.5.3-4, lxml/5.2.1-1".

So python3-lxml 5.2.1-1 is regarded as buggy.

-- 
Vincent Lefèvre <vincent@vinc17.net> - Web: <https://www.vinc17.net/>
100% accessible validated (X)HTML - Blog: <https://www.vinc17.net/blog/>
Work: CR INRIA - computer arithmetic / AriC project (LIP, ENS-Lyon)

Message #64 received at 1068349@bugs.debian.org (full text, mbox, reply):

From: Vincent Lefevre <vincent@vinc17.net>

To: "Rebecca N. Palmer" <rebecca_palmer@zoho.com>, 1068349@bugs.debian.org

Cc: Antonio Valentino <antonio.valentino@tiscali.it>

Subject: Re: Bug#1068349: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Tue, 7 May 2024 13:09:07 +0200

Control: reopen -1

On 2024-05-07 11:25:05 +0200, Vincent Lefevre wrote:
> What's the status of this bug?
> 
> apt-listbugs still reports python3-lxml as buggy:
> 
> serious bugs of python3-lxml (5.1.0-1 → 5.2.1-1) <Resolved in some Version>
>  b1 - #1068349 - nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean (Fixed: nbconvert/6.5.3-5)
> Summary:
>  python3-lxml(1 bug)
> 
> Indeed, https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1068349
> says: "Found in versions nbconvert/6.5.3-4, lxml/5.2.1-1".
> 
> So python3-lxml 5.2.1-1 is regarded as buggy.

And this bug prevents the migration to testing:

https://tracker.debian.org/pkg/lxml

testing migrations
[...]
Issues preventing migration:
∙ ∙ Updating lxml would introduce bugs in testing: #1068349

It seems that this bug (assigned to 2 different packages) has been
closed by mistake, due to the fix of nbconvert:

Format: 1.8
Date: Sun, 14 Apr 2024 16:52:34 +0100
Source: nbconvert
Architecture: source
Version: 6.5.3-5
[...]
Closes: 1042699 1068349
[...]
   * (Build-)depend on python3-lxml-html-clean (closes: #1068349).

But this is inconsistent with the fact that lxml is still marked as
unfixed. So, reopening.

-- 
Vincent Lefèvre <vincent@vinc17.net> - Web: <https://www.vinc17.net/>
100% accessible validated (X)HTML - Blog: <https://www.vinc17.net/blog/>
Work: CR INRIA - computer arithmetic / AriC project (LIP, ENS-Lyon)

Message #75 received at 1068349-done@bugs.debian.org (full text, mbox, reply):

From: "Rebecca N. Palmer" <rebecca_palmer@zoho.com>

To: 1068349-done@bugs.debian.org

Subject: Re: Bug#1068349: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Sun, 19 May 2024 16:25:01 +0100

Filing a bug against two packages means that it could be fixed in 
*either* of them, *not* that it requires changes to both of them. 
Hence, it is correct that this bug was closed.

>  From codesearch, other packages that may need such a Depends are 
> html-text, extruct, python-html-sanitizer, napari, readability, calibre, 
> python-webob.

extruct, calibre and readability have now added that dependency, and 
python-webob doesn't actually use it (only mentions it in documentation).

I have filed separate bugs for napari, html-text and python-html-sanitizer.

Message #80 received at 1068349@bugs.debian.org (full text, mbox, reply):

From: Paul Gevers <elbrus@debian.org>

To: 1068349@bugs.debian.org, "Rebecca N. Palmer" <rebecca_palmer@zoho.com>

Subject: Re: Bug#1068349: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Thu, 30 May 2024 22:36:05 +0200

[Message part 1 (text/plain, inline)]

Hi,

On Sun, 19 May 2024 16:25:01 +0100 "Rebecca N. Palmer" 
<rebecca_palmer@zoho.com> wrote:
> Filing a bug against two packages means that it could be fixed in 
> *either* of them, *not* that it requires changes to both of them. 
> Hence, it is correct that this bug was closed.

While I recall it's documented like this, this is not how the BTS 
reports this bug to the outside world and the migration software is 
still informed that this bug affects src:lxml with its version in 
unstable and hence blocks migration.

Are you saying that if lxml migrates to testing, everything is fine? 
Than the easiest thing to do is to assign this bug to the package that 
fixed it.

Paul

[OpenPGP_signature.asc (application/pgp-signature, attachment)]

Message #85 received at 1068349@bugs.debian.org (full text, mbox, reply):

From: Paul Gevers <elbrus@debian.org>

To: 1068349@bugs.debian.org

Subject: Re: Bug#1068349: nbsphinx/nbconvert broken by lxml 5.2: lxml.html.clean

Date: Sun, 23 Jun 2024 21:43:01 +0200

[Message part 1 (text/plain, inline)]

Control: reassign -1 python3-nbconvert 6.5.3-4
Control: fixed -1 6.5.3-5
Control: affects -1 python3-lxml

On Thu, 30 May 2024 22:36:05 +0200 Paul Gevers <elbrus@debian.org> wrote:
> Are you saying that if lxml migrates to testing, everything is fine? 
> Than the easiest thing to do is to assign this bug to the package that 
> fixed it.

As there was no reply, I'm going to assume this is the correct 
interpretation to enable lxml to migrate.

Paul

[OpenPGP_signature.asc (application/pgp-signature, attachment)]

Send a report that this bug log contains spam.