Debian Bug report logs - #1038733
r-cran-rgeos: autopkgtest failure with GEOS 3.12

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Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: Bas Couwenberg <sebastic@xs4all.nl>

To: Debian Bug Tracking System <submit@bugs.debian.org>

Subject: r-cran-rgeos: autopkgtest failure with GEOS 3.12

Date: Tue, 20 Jun 2023 19:03:35 +0200

[Message part 1 (text/plain, inline)]

Source: r-cran-rgeos
Version: 0.6-1-1
Severity: important
Tags: upstream patch
User: debian-gis@lists.debian.org
Usertags: geos-3.12

Dear Maintainer,

The autopkgtest of your package fail with GEOS 3.12 from experimental:

 == Failed tests ================================================================
 -- Error ('test-misc.R:50'): gNearestPoints works with different geometries as inputs --
 Error: Unable to parse: MULTIPOLYGON(((34 54, 60 34, 60 54, 34 54),                               (50 50, 52 50, 52 48, 50 48, 50 50)),                              ((100 100, 150 100, 150 150, 100 150, 100 100),                               (120 120, 120 130, 130 130, 130 120, 120 120))))
 GEOS reported: "rgeos_readWKT: unable to read wkt"
 Backtrace:
     x
  1. \-rgeos::readWKT("MULTIPOLYGON(((34 54, 60 34, 60 54, 34 54),\n                               (50 50, 52 50, 52 48, 50 48, 50 50)),\n                              ((100 100, 150 100, 150 150, 100 150, 100 100),\n                               (120 120, 120 130, 130 130, 130 120, 120 120))))") at test-misc.R:50:2
  2.   \-base::tryCatch(...)
  3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.         \-value[[3L]](cond)
 
 [ FAIL 1 | WARN 28 | SKIP 0 | PASS 116 ]
 Error: Test failures

https://ci.debian.net/data/autopkgtest/unstable/amd64/r/r-cran-rgeos/34462234/log.gz

The attached patch resolves the issue.

Upstream mentioned they fixed the issue in 0.6-4 which is not on CRAN yet at time of writing.

See: https://lists.osgeo.org/pipermail/geos-devel/2023-June/010957.html

Kind Regards,

Bas

[geos-3.12.patch (text/plain, attachment)]

Message #10 received at 1038733-close@bugs.debian.org (full text, mbox, reply):

From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>

To: 1038733-close@bugs.debian.org

Subject: Bug#1038733: fixed in r-cran-rgeos 0.6-3-1

Date: Wed, 21 Jun 2023 13:53:20 +0000

Source: r-cran-rgeos
Source-Version: 0.6-3-1
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
r-cran-rgeos, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1038733@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated r-cran-rgeos package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 21 Jun 2023 11:33:58 +0200
Source: r-cran-rgeos
Architecture: source
Version: 0.6-3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 1038733
Changes:
 r-cran-rgeos (0.6-3-1) unstable; urgency=medium
 .
   * New upstream version
   * Fix failure with failure with GEOS 3.12 (Thanks for the patch to
     Bas Couwenberg)
     Closes: #1038733
Checksums-Sha1:
 ac6ff1817bb8e2c8f9785d8cd06b23fd5330c130 2158 r-cran-rgeos_0.6-3-1.dsc
 0e9d8cf391111d2e6825b56d4e11cf1f5d5af030 290912 r-cran-rgeos_0.6-3.orig.tar.gz
 e5173c634a08be749e52680d141fd13ab328196e 4340 r-cran-rgeos_0.6-3-1.debian.tar.xz
 3292bfd50095beb298391d4090131450eddeda84 10896 r-cran-rgeos_0.6-3-1_amd64.buildinfo
Checksums-Sha256:
 60f7bd6fb81161cefea64c214809863d580e7b0f38d0eb73f135ca9bb83b4a79 2158 r-cran-rgeos_0.6-3-1.dsc
 1ebc5a99fdcf7d293811ce26379ba1525a2b9f23b11f1fb4a9c582bf27fc2b3c 290912 r-cran-rgeos_0.6-3.orig.tar.gz
 c5b4eda9cbf7552aab564a62a7c75f664671ce9e70f14230b5a6737aa0327fc1 4340 r-cran-rgeos_0.6-3-1.debian.tar.xz
 5f420cfb3ab8acf5c9218cfbaced37e2014bd0c0f484dcf4e9349b909e6b7ccc 10896 r-cran-rgeos_0.6-3-1_amd64.buildinfo
Files:
 68e9725aef80c12b6f119ec745fb33d5 2158 gnu-r optional r-cran-rgeos_0.6-3-1.dsc
 019be8e39913e7353557eb2d9dd00fa8 290912 gnu-r optional r-cran-rgeos_0.6-3.orig.tar.gz
 8530ff93ee4ceb09c368cdb9e62993be 4340 gnu-r optional r-cran-rgeos_0.6-3-1.debian.tar.xz
 54125cd27900e70ef16d0bf2a229f896 10896 gnu-r optional r-cran-rgeos_0.6-3-1_amd64.buildinfo

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Message #15 received at 1038733@bugs.debian.org (full text, mbox, reply):

From: Sebastiaan Couwenberg <sebastic@xs4all.nl>

To: 1038733@bugs.debian.org

Subject: Re: r-cran-rgeos: autopkgtest failure with GEOS 3.12

Date: Wed, 28 Jun 2023 07:41:35 +0200

severity 1038733 serious
thanks

GEOS 3.12.0 is now in unstable, raising the severity accordingly.

Testing migration of r-cran-rgeos (0.6-3-1) is blocked by r-base which 
in turn is blocked by autopkgtest failures of quite a few rdeps.

Kind Regards,

Bas

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