Debian Bug report logs - #1028051
unifrac-tools: please make the build reproducible

version graph

Package: src:unifrac-tools; Maintainer for src:unifrac-tools is Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>;

Reported by: "Chris Lamb" <lamby@debian.org>

Date: Fri, 6 Jan 2023 11:03:01 UTC

Severity: wishlist

Tags: patch

Found in version unifrac-tools/1.2-1

Fixed in version unifrac-tools/1.2-2

Done: Andreas Tille <tille@debian.org>

Bug is archived. No further changes may be made.

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Report forwarded to debian-bugs-dist@lists.debian.org, reproducible-bugs@lists.alioth.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>:
Bug#1028051; Package src:unifrac-tools. (Fri, 06 Jan 2023 11:03:03 GMT) (full text, mbox, link).


Acknowledgement sent to "Chris Lamb" <lamby@debian.org>:
New Bug report received and forwarded. Copy sent to reproducible-bugs@lists.alioth.debian.org, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>. (Fri, 06 Jan 2023 11:03:03 GMT) (full text, mbox, link).


Message #5 received at submit@bugs.debian.org (full text, mbox, reply):

From: "Chris Lamb" <lamby@debian.org>
To: submit@bugs.debian.org
Subject: unifrac-tools: please make the build reproducible
Date: Fri, 06 Jan 2023 10:58:10 +0000
[Message part 1 (text/plain, inline)]
Source: unifrac-tools
Version: 1.2-1
Severity: wishlist
Tags: patch
User: reproducible-builds@lists.alioth.debian.org
Usertags: buildpath
X-Debbugs-Cc: reproducible-bugs@lists.alioth.debian.org

Hi,

Whilst working on the Reproducible Builds effort [0] we noticed that
unifrac-tools could not be built reproducibly.

This is because upstream's Makefile does not use the contents of
CFLAGS from dpkg-buildflags so it misses the reproducibility-related
compiler flags (and likely others).

Proof of concept patch attached.

 [0] https://reproducible-builds.org/


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby@debian.org / chris-lamb.co.uk
       `-
[unifrac-tools.diff.txt (text/plain, attachment)]

Reply sent to Andreas Tille <tille@debian.org>:
You have taken responsibility. (Mon, 09 Jan 2023 08:51:08 GMT) (full text, mbox, link).


Notification sent to "Chris Lamb" <lamby@debian.org>:
Bug acknowledged by developer. (Mon, 09 Jan 2023 08:51:08 GMT) (full text, mbox, link).


Message #10 received at 1028051-close@bugs.debian.org (full text, mbox, reply):

From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>
To: 1028051-close@bugs.debian.org
Subject: Bug#1028051: fixed in unifrac-tools 1.2-2
Date: Mon, 09 Jan 2023 08:50:02 +0000
Source: unifrac-tools
Source-Version: 1.2-2
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
unifrac-tools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1028051@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated unifrac-tools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 09 Jan 2023 08:31:31 +0100
Source: unifrac-tools
Architecture: source
Version: 1.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 1028051
Changes:
 unifrac-tools (1.2-2) unstable; urgency=medium
 .
   * Sneak in CFLAGS via CPPFLAGS to work around missing support of CLFAGS
     in upstream Makefile
     Closes: #1028051
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Bug archived. Request was from Debbugs Internal Request <owner@bugs.debian.org> to internal_control@bugs.debian.org. (Sun, 12 Feb 2023 07:28:57 GMT) (full text, mbox, link).


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