Debian Bug report logs - #435915
ITP: mira -- Whole Genome Shotgun and EST Sequence Assembler

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Message #5 received at submit@bugs.debian.org (full text, mbox):

From: Charles Plessy <charles-debian-nospam@plessy.org>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: mira -- Whole Genome Shotgun and EST Sequence Assembler
Date: Sat, 04 Aug 2007 13:48:51 +0900

Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

  Package name    : mira
  Version         : 2.8.2
  Upstream Author : Bastien Chevreux
  URL             : http://chevreux.org/projects_mira.html
  License         : GPL
  Programming Lang: C
  Description     : Whole Genome Shotgun and EST Sequence Assembler

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
 specialised on reconstructing pristine mRNA transcripts while
 detecting and classifying single nucleotide polymorphisms (SNP)
 occuring in different variations thereof.
 .
 The assembler is routinely used for such various tasks as mutation
 detection in different cell types, similarity analysis of transcripts
 between organisms, and pristine assembly of sequences from various
 sources for oligo design in clinical microarray experiments.
 .
  Homepage: http://chevreux.org/projects_mira.html


Mira has been freed under the GPL last friday, I will try to package
it quickly to help it having a good start.

-- 
Charles Plessy
Wako, Saitama, Japan
Debian-Med packaging team.

Message #10 received at 435915-done@bugs.debian.org (full text, mbox):

From: David Moreno Garza <damog@merkel.debian.org>
To: 435915-done@bugs.debian.org
Subject: WNPP bug closing
Date: Fri, 08 Aug 2008 11:59:37 -0600

Hello,

This is an automatic mail sent to close the ITP you have reported or 
are involved with.

Your ITP wnpp bug is being closed because of the following reasons:
- It is, as of today, older than 365 days.
- It hasn't had any activity recently.

As this is an automatic procedure, it could of course have something
wrong and probably it would be closing some bugs that are not 
intended by owners and submitters (like you) to be closed, for
example if the ITP is still of your interest, or there has been 
some kind of activity around it. In that case, please reopen the
bug, do it, DO IT NOW! (I don't want to be blamed because of
mass closing and not let people know that they can easily reopen
their bugs ;-).

To re-open it, you simply have to mail control@bugs.debian.org
with a body text like this:

 reopen 435915
 stop

Further comments on the work done in the bug sent to
435915@bugs.debian.org would be truly welcomed.
Anyway, if you have any kind of problems when dealing with
the BTS, feel free to contact me and I'd be more than happy to help
you on this: <damog@debian.org>.

A similar process is being applied to other kind of wnpp bugs.

Thanks for your cooperation,

 -- David Moreno Garza <damog@debian.org>.
 

Message #15 received at 435915@bugs.debian.org (full text, mbox):

From: Charles Plessy <plessy@debian.org>
To: Debian Bug Tracking System <control@bugs.debian.org>
Cc: 435915@bugs.debian.org
Subject: Re: Bug#435915: marked as done (ITP: mira -- Whole Genome Shotgun and EST Sequence Assembler)
Date: Sat, 9 Aug 2008 10:10:41 +0900

reopen 435915
owner plessy@debian.org
stop

After Lenny release, I will focus on sequence assebly programs and Mira
will be packaged.

-- 
Charles

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